View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3039_high_17 (Length: 390)

Name: NF3039_high_17
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3039_high_17
NF3039_high_17
[»] chr3 (3 HSPs)
chr3 (1-375)||(28959924-28960295)
chr3 (1-88)||(34816667-34816751)
chr3 (8-84)||(36226883-36226956)
[»] chr7 (3 HSPs)
chr7 (1-88)||(44184002-44184086)
chr7 (1-80)||(3265330-3265406)
chr7 (2-86)||(22794816-22794897)
[»] chr1 (6 HSPs)
chr1 (1-88)||(11330920-11331004)
chr1 (1-88)||(11488941-11489025)
chr1 (2-87)||(5207580-5207662)
chr1 (1-88)||(41910016-41910100)
chr1 (1-88)||(24855156-24855240)
chr1 (10-88)||(7423301-7423376)
[»] chr8 (1 HSPs)
chr8 (1-91)||(25487547-25487634)
[»] chr4 (4 HSPs)
chr4 (1-94)||(37061937-37062027)
chr4 (2-77)||(26947186-26947258)
chr4 (61-91)||(32037389-32037419)
chr4 (1-88)||(37734998-37735082)
[»] chr5 (3 HSPs)
chr5 (1-88)||(24229392-24229476)
chr5 (2-87)||(9035386-9035468)
chr5 (52-91)||(24229505-24229544)
[»] chr2 (1 HSPs)
chr2 (4-88)||(19427778-19427859)
[»] chr6 (2 HSPs)
chr6 (1-88)||(19636420-19636504)
chr6 (52-94)||(19255022-19255064)


Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 28960295 - 28959924
Alignment:
Q  1 ccacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaactcatcatcacta 100  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||   |||    
T  28960295 ccacatcaattaaaatcattaattattgtgacaattcaaaatattattttaattggttgagtgtacaaaactgttttggaccgtcaacccatca---cta 28960199  T
Q  101 ttaaaactctttaaaaagccaaaataagctataaacattgatggagaaagaaacttacttgattggaagttgttgaaacaaagaagacatatcacttaat 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28960198 ttaaaactctttaaaaagccaaaataagctataaaaattgatggagaaagaaacttacttgattggaagttgttgaaacaaagaagacatatcacttaat 28960099  T
Q  201 ggatcagcttctgcaagttgatgagtagatgaggatgaagaagatgaagtaggagatgtaacatcttcaaatgaatcagattctgataattctgatgatg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28960098 ggatcagcttctgcaagttgatgagtagatgaggatgaagaagatgaagtaggagatgtaacatcttcaaatgaatcagattctgataattctgatgatg 28959999  T
Q  301 aattaccatttgaaacttcagaatctgaagaaaagaaagaaccatctataatatcatcatagtcttcatgaaatg 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28959998 aattaccatttgaaacttcagaatctgaagaaaagaaagaaccatctataatatcatcatagtcttcatgaaatg 28959924  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 34816667 - 34816751
Alignment:
Q  1 ccacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaac 88  Q
    ||||||||||||||||||||||||  |||||||||||| ||| ||   || ||||||||  |||||||||||||||||||||||||||    
T  34816667 ccacataaattaaaatcattaattgatgtggcaattcagaatgtt---ttgattggttgtatgtgcaaaactgttttggaccgtcaac 34816751  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 36226956 - 36226883
Alignment:
Q  8 aattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgt 84  Q
    |||||||||||||||||| |||||||||| | ||||||   || |||||||| |||||||||| |||||||||||||    
T  36226956 aattaaaatcattaattaatgtggcaatttagaatatt---ttgattggttgtgtgtgcaaaattgttttggaccgt 36226883  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 44184002 - 44184086
Alignment:
Q  1 ccacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaac 88  Q
    ||||||||||||||||||||||||  |||| ||||||| ||| ||   || |||||||| ||||||||||||||||||||||||||||    
T  44184002 ccacataaattaaaatcattaattgatgtgacaattcagaatgtt---ttgattggttgtgtgtgcaaaactgttttggaccgtcaac 44184086  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 3265330 - 3265406
Alignment:
Q  1 ccacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttgga 80  Q
    ||||||||||||||| ||||||||  |||| |||||| |||||||   ||||||||||  |||||||||| |||||||||    
T  3265330 ccacataaattaaaaacattaattgatgtgacaattctaaatatt---ttaattggttatgtgtgcaaaattgttttgga 3265406  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 86
Target Start/End: Complemental strand, 22794897 - 22794816
Alignment:
Q  2 cacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtca 86  Q
    |||||||||| ||||||||||||  | |||| ||||| ||| ||   || |||||||| ||||||||||||||||||||| ||||    
T  22794897 cacataaattgaaatcattaattgatatggcgattcagaatgtt---ttgattggttgtgtgtgcaaaactgttttggactgtca 22794816  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 11331004 - 11330920
Alignment:
Q  1 ccacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaac 88  Q
    ||||||||||||||||||||||||  | || ||||||||||||||   || |||| ||| || |||||||||||||||||||||||||    
T  11331004 ccacataaattaaaatcattaattgatatgacaattcaaaatatt---ttgattgattgtgtctgcaaaactgttttggaccgtcaac 11330920  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 11489025 - 11488941
Alignment:
Q  1 ccacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaac 88  Q
    ||||||||||||||||||||||||  | || ||||||||||||||   || |||| ||| || |||||||||||||||||||||||||    
T  11489025 ccacataaattaaaatcattaattgatatgacaattcaaaatatt---ttgattgattgtgtctgcaaaactgttttggaccgtcaac 11488941  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 5207662 - 5207580
Alignment:
Q  2 cacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaa 87  Q
    |||||||||||||||||||||||  |||||||||||| ||| ||   || ||||||||  || |||||||||||||||||||||||    
T  5207662 cacataaattaaaatcattaattgatgtggcaattcagaatgtt---ttgattggttgtatgcgcaaaactgttttggaccgtcaa 5207580  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 41910100 - 41910016
Alignment:
Q  1 ccacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaac 88  Q
    |||||||||||||||||||||| |  |||| ||||||||||| ||   || |||| ||| |||| |||||||||||||||||||||||    
T  41910100 ccacataaattaaaatcattaactgatgtgacaattcaaaatgtt---ttgattgattgtgtgtccaaaactgttttggaccgtcaac 41910016  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 24855156 - 24855240
Alignment:
Q  1 ccacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaac 88  Q
    |||||||| |||||||||||||||  |||| ||||| | ||||||   || ||||||||  ||||||||| |||||||||||||||||    
T  24855156 ccacataagttaaaatcattaattgatgtgacaatttagaatatt---ttgattggttgtatgtgcaaaattgttttggaccgtcaac 24855240  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 7423301 - 7423376
Alignment:
Q  10 ttaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaac 88  Q
    |||||||||||||||| |||||| ||||| ||| ||   || |||||||| |||| ||||||||| |||||| ||||||    
T  7423301 ttaaaatcattaattaatgtggcgattcagaatgtt---ttgattggttgtgtgtacaaaactgtattggactgtcaac 7423376  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 25487547 - 25487634
Alignment:
Q  1 ccacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaactca 91  Q
    ||||||||||||||||||||||||  |||| ||||||| ||| ||   || |||||||| ||||| |||||||||||||||| ||||||||    
T  25487547 ccacataaattaaaatcattaattgatgtgacaattcagaatgtt---ttgattggttgtgtgtgtaaaactgttttggaccatcaactca 25487634  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 37062027 - 37061937
Alignment:
Q  1 ccacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaactcatca 94  Q
    ||||||||||||||||||||||||  |||| |||||| |||| ||   || |||||||| |||||||||||||||||| | ||||||| |||||    
T  37062027 ccacataaattaaaatcattaattgatgtgacaattctaaatgtt---ttgattggttgtgtgtgcaaaactgttttgaatcgtcaacccatca 37061937  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 26947186 - 26947258
Alignment:
Q  2 cacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgtttt 77  Q
    |||||||||||||||||||||||  |||||| ||||||||||||   || |||||||  |||||||||||||||||    
T  26947186 cacataaattaaaatcattaattgatgtggcgattcaaaatatt---ttgattggttatgtgtgcaaaactgtttt 26947258  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 91
Target Start/End: Original strand, 32037389 - 32037419
Alignment:
Q  61 gtgtgcaaaactgttttggaccgtcaactca 91  Q
    |||||||||||||||||||||||||||||||    
T  32037389 gtgtgcaaaactgttttggaccgtcaactca 32037419  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 37734998 - 37735082
Alignment:
Q  1 ccacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaac 88  Q
    ||||||||||||||||||||||||  |||| ||||||| ||| ||   || |||| |||  |||| ||||||||||||||| ||||||    
T  37734998 ccacataaattaaaatcattaattgatgtgtcaattcagaatgtt---ttgattgtttgtttgtgaaaaactgttttggactgtcaac 37735082  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 24229476 - 24229392
Alignment:
Q  1 ccacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaac 88  Q
    ||||||||||||||||||||||||    || ||||||| ||||||   || |||||||| ||||||||||||||||||||| ||||||    
T  24229476 ccacataaattaaaatcattaattgaaatgacaattcagaatatt---ttgattggttgtgtgtgcaaaactgttttggactgtcaac 24229392  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 9035386 - 9035468
Alignment:
Q  2 cacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaa 87  Q
    |||||||||||||||||||||||  |||||||||||| || |||   || |||||||  |||||||||| ||||||||| ||||||    
T  9035386 cacataaattaaaatcattaattgatgtggcaattcataaaatt---ttgattggttatgtgtgcaaaattgttttggatcgtcaa 9035468  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 24229505 - 24229544
Alignment:
Q  52 attggttgagtgtgcaaaactgttttggaccgtcaactca 91  Q
    |||||||| ||||||||||||||||||||| |||||||||    
T  24229505 attggttgtgtgtgcaaaactgttttggactgtcaactca 24229544  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 19427859 - 19427778
Alignment:
Q  4 cataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaac 88  Q
    |||||| ||||||||||||||  |||||||||||| ||| ||   || || ||||| |||||||||||||||||||| |||||||    
T  19427859 cataaaataaaatcattaattgatgtggcaattcagaatgtt---ttgatcggttgtgtgtgcaaaactgttttggatcgtcaac 19427778  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 19636504 - 19636420
Alignment:
Q  1 ccacataaattaaaatcattaattattgtggcaattcaaaatattatcttaattggttgagtgtgcaaaactgttttggaccgtcaac 88  Q
    ||||||||||||||||||||||||  |||||| |||| |||| ||   || |||||||  |||||||||||||||||| || ||||||    
T  19636504 ccacataaattaaaatcattaattgatgtggcgattctaaatgtt---ttgattggttctgtgtgcaaaactgttttgaactgtcaac 19636420  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 19255022 - 19255064
Alignment:
Q  52 attggttgagtgtgcaaaactgttttggaccgtcaactcatca 94  Q
    |||||||| |||||||||| ||||||||||||||||| |||||    
T  19255022 attggttgtgtgtgcaaaattgttttggaccgtcaacccatca 19255064  T

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