View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3039_high_24 (Length: 334)

Name: NF3039_high_24
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3039_high_24
NF3039_high_24
[»] chr4 (33 HSPs)
chr4 (3-324)||(25026624-25026946)
chr4 (2-73)||(45532578-45532650)
chr4 (2-74)||(4586756-4586829)
chr4 (2-72)||(9670479-9670550)
chr4 (2-75)||(38223576-38223650)
chr4 (2-58)||(9239295-9239352)
chr4 (2-73)||(32175736-32175808)
chr4 (2-73)||(44783549-44783621)
chr4 (2-76)||(55309208-55309284)
chr4 (2-56)||(2275694-2275749)
chr4 (2-72)||(7111946-7112017)
chr4 (2-72)||(19839245-19839316)
chr4 (2-72)||(22168334-22168405)
chr4 (6-72)||(38645820-38645887)
chr4 (2-71)||(4627079-4627149)
chr4 (6-75)||(38619917-38619987)
chr4 (2-73)||(13564914-13564986)
chr4 (5-56)||(29625394-29625446)
chr4 (2-72)||(5473915-5473986)
chr4 (2-56)||(9238641-9238696)
chr4 (7-77)||(19680419-19680490)
chr4 (2-72)||(42055463-42055534)
chr4 (5-66)||(37378629-37378691)
chr4 (3-72)||(54539353-54539423)
chr4 (6-72)||(12106052-12106119)
chr4 (2-72)||(18714968-18715039)
chr4 (5-71)||(24682328-24682395)
chr4 (7-73)||(30268987-30269054)
chr4 (7-73)||(30283135-30283202)
chr4 (6-56)||(30568015-30568066)
chr4 (7-72)||(27040025-27040091)
chr4 (2-73)||(12072028-12072100)
chr4 (2-73)||(13028815-13028887)
[»] chr3 (40 HSPs)
chr3 (2-75)||(19269861-19269935)
chr3 (2-82)||(8110403-8110484)
chr3 (6-73)||(25882638-25882706)
chr3 (2-72)||(8428235-8428306)
chr3 (2-72)||(21816785-21816856)
chr3 (2-72)||(43329763-43329834)
chr3 (2-72)||(48404924-48404995)
chr3 (2-75)||(26390631-26390705)
chr3 (2-73)||(13921389-13921461)
chr3 (5-72)||(29956439-29956507)
chr3 (5-72)||(30005594-30005662)
chr3 (2-72)||(5261001-5261072)
chr3 (2-56)||(17762706-17762761)
chr3 (5-75)||(18104527-18104598)
chr3 (2-56)||(19064026-19064081)
chr3 (2-72)||(19223513-19223584)
chr3 (2-72)||(26098877-26098948)
chr3 (6-72)||(27449156-27449223)
chr3 (2-58)||(28859655-28859712)
chr3 (9-72)||(29236115-29236179)
chr3 (7-73)||(9652647-9652714)
chr3 (2-72)||(10941665-10941736)
chr3 (2-76)||(13905034-13905109)
chr3 (2-72)||(18380088-18380159)
chr3 (7-56)||(18091563-18091613)
chr3 (2-36)||(19545574-19545608)
chr3 (7-56)||(29704048-29704098)
chr3 (2-74)||(1310957-1311030)
chr3 (5-65)||(8546312-8546373)
chr3 (4-56)||(29451160-29451213)
chr3 (5-56)||(11219205-11219257)
chr3 (2-56)||(1745504-1745558)
chr3 (2-37)||(21490070-21490105)
chr3 (2-72)||(31250152-31250223)
chr3 (2-72)||(47263265-47263336)
chr3 (2-36)||(6088265-6088299)
chr3 (2-71)||(11915822-11915892)
chr3 (2-36)||(23773541-23773575)
chr3 (7-36)||(6718779-6718808)
chr3 (6-73)||(11085341-11085409)
[»] chr5 (32 HSPs)
chr5 (2-74)||(618362-618435)
chr5 (2-72)||(7888865-7888936)
chr5 (2-72)||(16631874-16631945)
chr5 (2-72)||(26708585-26708656)
chr5 (2-72)||(26978319-26978390)
chr5 (2-72)||(38837671-38837742)
chr5 (2-75)||(746865-746939)
chr5 (7-72)||(4125188-4125254)
chr5 (2-74)||(16121837-16121910)
chr5 (5-73)||(28265474-28265543)
chr5 (2-73)||(35620343-35620414)
chr5 (2-72)||(12045795-12045866)
chr5 (3-72)||(25652583-25652653)
chr5 (2-78)||(17036406-17036483)
chr5 (2-73)||(10494805-10494877)
chr5 (2-73)||(17039630-17039702)
chr5 (9-72)||(36196469-36196533)
chr5 (2-72)||(2472714-2472785)
chr5 (2-72)||(20187941-20188012)
chr5 (7-72)||(8108860-8108926)
chr5 (2-71)||(17771969-17772039)
chr5 (7-56)||(23975708-23975758)
chr5 (2-74)||(12328224-12328297)
chr5 (3-66)||(17986798-17986862)
chr5 (2-73)||(24138840-24138912)
chr5 (2-72)||(8886851-8886922)
chr5 (7-65)||(15061046-15061105)
chr5 (3-73)||(20959577-20959648)
chr5 (6-56)||(36716216-36716267)
chr5 (5-73)||(7003729-7003798)
chr5 (2-39)||(36597374-36597411)
chr5 (2-72)||(5982713-5982785)
[»] chr7 (34 HSPs)
chr7 (2-73)||(1842962-1843034)
chr7 (2-72)||(3872187-3872258)
chr7 (2-72)||(18217897-18217968)
chr7 (2-72)||(22486462-22486533)
chr7 (6-72)||(31425511-31425578)
chr7 (2-79)||(7733305-7733383)
chr7 (5-72)||(23539303-23539371)
chr7 (3-73)||(15014404-15014475)
chr7 (7-73)||(20429538-20429605)
chr7 (2-72)||(21917334-21917405)
chr7 (2-72)||(27806086-27806157)
chr7 (6-72)||(47523650-47523717)
chr7 (3-72)||(6849211-6849281)
chr7 (7-72)||(23699825-23699891)
chr7 (5-74)||(48933207-48933277)
chr7 (2-73)||(3904477-3904549)
chr7 (2-73)||(9698537-9698609)
chr7 (7-73)||(11036580-11036647)
chr7 (2-48)||(21623089-21623136)
chr7 (6-72)||(23232111-23232178)
chr7 (2-72)||(23577189-23577260)
chr7 (2-56)||(23750752-23750807)
chr7 (6-72)||(24605910-24605977)
chr7 (2-72)||(28800946-28801017)
chr7 (7-56)||(20174093-20174143)
chr7 (6-72)||(15969856-15969924)
chr7 (7-73)||(2650827-2650894)
chr7 (2-36)||(10050873-10050907)
chr7 (2-75)||(38057700-38057774)
chr7 (2-36)||(45664836-45664870)
chr7 (5-73)||(37135284-37135353)
chr7 (7-74)||(42926417-42926486)
chr7 (13-72)||(2093362-2093422)
chr7 (2-73)||(39979623-39979695)
[»] chr1 (35 HSPs)
chr1 (2-72)||(45839360-45839431)
chr1 (2-75)||(4340475-4340549)
chr1 (2-74)||(28229453-28229526)
chr1 (2-76)||(19865312-19865387)
chr1 (6-75)||(46790072-46790142)
chr1 (2-73)||(6459285-6459357)
chr1 (7-74)||(23457970-23458038)
chr1 (2-72)||(8940994-8941065)
chr1 (2-72)||(9109975-9110046)
chr1 (2-72)||(12720877-12720948)
chr1 (3-73)||(46339444-46339515)
chr1 (7-72)||(12161887-12161953)
chr1 (2-75)||(15243153-15243227)
chr1 (7-72)||(17661123-17661189)
chr1 (7-72)||(50092298-50092364)
chr1 (7-72)||(52183751-52183817)
chr1 (2-74)||(6412051-6412124)
chr1 (3-75)||(38531167-38531240)
chr1 (2-74)||(46785956-46786029)
chr1 (5-72)||(20408160-20408228)
chr1 (2-73)||(41120736-41120808)
chr1 (7-65)||(22158875-22158934)
chr1 (7-72)||(18890549-18890615)
chr1 (5-65)||(9464174-9464235)
chr1 (6-74)||(17200008-17200077)
chr1 (7-66)||(20290327-20290386)
chr1 (2-56)||(9177168-9177223)
chr1 (6-72)||(22603620-22603687)
chr1 (2-36)||(32046944-32046978)
chr1 (6-36)||(41359060-41359090)
chr1 (13-74)||(51973503-51973565)
chr1 (3-36)||(16913614-16913647)
chr1 (6-73)||(14760939-14761007)
chr1 (3-74)||(29093552-29093624)
chr1 (2-73)||(50845329-50845401)
[»] chr6 (40 HSPs)
chr6 (6-75)||(22579346-22579416)
chr6 (7-82)||(16250792-16250868)
chr6 (2-73)||(24661008-24661080)
chr6 (2-73)||(33250707-33250779)
chr6 (2-72)||(2669377-2669448)
chr6 (2-72)||(9893031-9893102)
chr6 (3-72)||(15448454-15448524)
chr6 (7-72)||(20182218-20182284)
chr6 (7-72)||(22153707-22153773)
chr6 (2-66)||(25398070-25398135)
chr6 (2-73)||(6978345-6978417)
chr6 (2-73)||(15364457-15364529)
chr6 (2-73)||(15961406-15961478)
chr6 (6-73)||(28364983-28365051)
chr6 (2-73)||(28668168-28668240)
chr6 (2-72)||(495627-495698)
chr6 (2-72)||(6598532-6598603)
chr6 (7-73)||(12160846-12160913)
chr6 (2-72)||(26224496-26224567)
chr6 (7-72)||(6605496-6605562)
chr6 (2-71)||(10458832-10458902)
chr6 (3-72)||(12351586-12351656)
chr6 (7-75)||(1939239-1939308)
chr6 (2-66)||(12200762-12200827)
chr6 (2-73)||(11049750-11049822)
chr6 (7-66)||(21141012-21141072)
chr6 (7-65)||(15509229-15509288)
chr6 (7-72)||(30833960-30834026)
chr6 (7-71)||(5360482-5360547)
chr6 (2-73)||(5250207-5250279)
chr6 (2-73)||(21990174-21990245)
chr6 (2-72)||(26939655-26939726)
chr6 (7-56)||(12499289-12499339)
chr6 (7-56)||(12506618-12506668)
chr6 (7-56)||(12509562-12509612)
chr6 (2-32)||(13145070-13145100)
chr6 (2-54)||(2992683-2992736)
chr6 (6-66)||(5192195-5192256)
chr6 (5-34)||(27705493-27705522)
chr6 (7-74)||(9060163-9060231)
[»] chr8 (42 HSPs)
chr8 (2-73)||(19240933-19241005)
chr8 (2-73)||(19314117-19314189)
chr8 (2-73)||(19488060-19488132)
chr8 (2-73)||(23752285-23752357)
chr8 (6-72)||(16061939-16062006)
chr8 (2-72)||(24576024-24576095)
chr8 (6-72)||(32247979-32248046)
chr8 (3-72)||(25000431-25000501)
chr8 (3-72)||(27910764-27910834)
chr8 (3-72)||(27957183-27957253)
chr8 (2-73)||(24636718-24636791)
chr8 (6-73)||(3823203-3823271)
chr8 (5-72)||(4331047-4331115)
chr8 (2-73)||(19256278-19256350)
chr8 (2-65)||(33652633-33652697)
chr8 (6-72)||(8555304-8555371)
chr8 (2-72)||(25274663-25274734)
chr8 (3-73)||(42700656-42700727)
chr8 (2-72)||(43431559-43431630)
chr8 (7-72)||(24193196-24193262)
chr8 (2-75)||(30688002-30688076)
chr8 (2-65)||(18010067-18010131)
chr8 (2-73)||(21350544-21350616)
chr8 (5-72)||(25655858-25655926)
chr8 (6-73)||(27869308-27869376)
chr8 (7-73)||(4647754-4647821)
chr8 (2-56)||(5670185-5670240)
chr8 (2-72)||(11938811-11938881)
chr8 (3-73)||(13060930-13061001)
chr8 (2-72)||(17810364-17810435)
chr8 (5-66)||(9915047-9915109)
chr8 (3-72)||(22939380-22939450)
chr8 (5-73)||(33412976-33413044)
chr8 (5-56)||(31399524-31399576)
chr8 (2-73)||(40289420-40289492)
chr8 (6-72)||(25273328-25273394)
chr8 (2-36)||(6817120-6817154)
chr8 (3-72)||(8824892-8824962)
chr8 (6-36)||(19493692-19493722)
chr8 (6-73)||(9631474-9631542)
chr8 (2-73)||(30466953-30467025)
chr8 (2-73)||(32961725-32961797)
[»] chr2 (28 HSPs)
chr2 (5-72)||(22140364-22140432)
chr2 (2-72)||(41736236-41736307)
chr2 (2-73)||(13788054-13788126)
chr2 (6-72)||(12779668-12779735)
chr2 (6-72)||(37552295-37552362)
chr2 (2-72)||(44476375-44476446)
chr2 (7-72)||(20065074-20065140)
chr2 (2-74)||(28841340-28841413)
chr2 (5-65)||(32300518-32300579)
chr2 (2-73)||(43408510-43408582)
chr2 (3-74)||(44722997-44723069)
chr2 (7-65)||(1141605-1141664)
chr2 (7-65)||(15636742-15636801)
chr2 (2-72)||(27039908-27039979)
chr2 (5-71)||(28319580-28319647)
chr2 (7-56)||(7093637-7093687)
chr2 (3-56)||(18551269-18551323)
chr2 (2-73)||(32009016-32009089)
chr2 (6-66)||(37723998-37724059)
chr2 (2-73)||(14757120-14757192)
chr2 (5-56)||(21293727-21293779)
chr2 (6-73)||(26243320-26243388)
chr2 (7-66)||(28262433-28262493)
chr2 (3-77)||(9004303-9004378)
chr2 (2-72)||(23857958-23858028)
chr2 (7-56)||(32185901-32185951)
chr2 (6-36)||(38362308-38362338)
chr2 (2-77)||(18609578-18609654)
[»] scaffold0009 (3 HSPs)
scaffold0009 (2-71)||(182598-182668)
scaffold0009 (7-72)||(219709-219775)
scaffold0009 (2-35)||(215701-215734)
[»] scaffold0576 (1 HSPs)
scaffold0576 (2-73)||(9228-9300)
[»] scaffold0219 (1 HSPs)
scaffold0219 (2-73)||(19671-19743)
[»] scaffold0128 (1 HSPs)
scaffold0128 (3-66)||(10669-10733)
[»] scaffold0007 (3 HSPs)
scaffold0007 (2-73)||(3810-3882)
scaffold0007 (2-72)||(202842-202913)
scaffold0007 (5-56)||(274681-274733)
[»] scaffold0603 (1 HSPs)
scaffold0603 (2-56)||(5995-6050)
[»] scaffold0011 (1 HSPs)
scaffold0011 (2-56)||(17633-17688)
[»] scaffold0062 (1 HSPs)
scaffold0062 (6-75)||(43989-44059)
[»] scaffold0014 (1 HSPs)
scaffold0014 (3-72)||(22280-22350)
[»] scaffold0001 (3 HSPs)
scaffold0001 (2-66)||(8116-8181)
scaffold0001 (2-66)||(21848-21913)
scaffold0001 (7-72)||(84376-84442)
[»] scaffold0184 (1 HSPs)
scaffold0184 (3-66)||(7525-7589)
[»] scaffold0002 (1 HSPs)
scaffold0002 (2-73)||(440031-440103)
[»] scaffold0108 (1 HSPs)
scaffold0108 (6-74)||(12724-12793)
[»] scaffold0006 (1 HSPs)
scaffold0006 (2-66)||(84680-84745)
[»] scaffold0240 (1 HSPs)
scaffold0240 (2-73)||(14989-15061)
[»] scaffold0076 (1 HSPs)
scaffold0076 (6-73)||(26555-26623)
[»] scaffold0554 (1 HSPs)
scaffold0554 (5-75)||(9881-9952)
[»] scaffold0023 (1 HSPs)
scaffold0023 (7-73)||(39702-39769)
[»] scaffold0599 (1 HSPs)
scaffold0599 (2-71)||(7573-7643)
[»] scaffold0035 (1 HSPs)
scaffold0035 (6-66)||(74723-74784)
[»] scaffold0161 (1 HSPs)
scaffold0161 (7-66)||(6868-6928)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 25026624 - 25026946
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgttagttgttagtgttaaacttggtataat 101  Q
    |||||||||||||| ||||||||||||||||||| |||| ||||||  ||||||||| ||||||||||||||| ||| ||||||||||||||||||||||    
T  25026624 aaggaatttgtgagaaatttcattttttccgtcactaatttccctcactaattttactttttctaatagtgttggttcttagtgttaaacttggtataat 25026723  T
Q  102 tcttagtagagctggaaaccttaagttttaggcattagtttttagtctttaattttatttgttgagtcctaaactcaacatttgacttagtaagtatata 201  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25026724 tcttagtagagctggaaaccttaagttataggcattagtttttagtctttaattttatttgttgagtcctaaactcaacatttgacttagtaagtatata 25026823  T
Q  202 tagttgtagggatcttagtttagttataggttataggtattagttgtagaccttaggtgtaactagttcttcatgtttgtgcttgttannnnnnngttgt 301  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||       |||||    
T  25026824 tagttgtacggatcttagtttagttataggttataggtattagttgtagaccttaggtgtaactagttcttcatgtttgtgcttcttatttttttgttgt 25026923  T
Q  302 ttgtatttatatttgtgcctatg 324  Q
    ||||||||||||||||| |||||    
T  25026924 ttgtatttatatttgtgtctatg 25026946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 45532650 - 45532578
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||    
T  45532650 caagaaatttgtgaggaatttcattttttccgtcactaatttccctcgttaattttgctttttctaatagtgt 45532578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 4586829 - 4586756
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||||    
T  4586829 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtgtt 4586756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 9670550 - 9670479
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  9670550 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttttctttttctagtagtg 9670479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 38223576 - 38223650
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||||  ||||||||||||||||| | ||||||    
T  38223576 caaggaatttgtaaggaattttattttttccgtcactaatctccctccctaattttacattttctagtggtgtta 38223650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 9239352 - 9239295
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttac 58  Q
    ||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  9239352 caaggaatttgtgagcaatttcattttttccgtcactaatttccctcgttaattttac 9239295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 32175808 - 32175736
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| |||||||||||||||| ||||||||||||| |||| ||||||||||||||| | ||||||| ||||||    
T  32175808 caagaaatttgtgaggaattttattttttccgtcactaatttccctcgttaattttgctttttctagtagtgt 32175736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 44783549 - 44783621
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| || |||| | ||||||| ||||||    
T  44783549 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctagttttgctttttctagtagtgt 44783621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 55309284 - 55309208
Alignment:
Q  2 caaggaatttgtgaggaatttcatt-ttttccgtca-taatctccctcgttaattttacattttctaatagtgttag 76  Q
    ||||||||||||||||||||||||| |||||||||| |||| ||||||| ||||||| | ||||||| |||||||||    
T  55309284 caaggaatttgtgaggaatttcatttttttccgtcactaatttccctcgctaattttgctttttctagtagtgttag 55309208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 2275749 - 2275694
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  2275749 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 2275694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 7112017 - 7111946
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  7112017 caagaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 7111946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 19839245 - 19839316
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  19839245 caaggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 19839316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 22168334 - 22168405
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  22168334 caaggaatttatgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 22168405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 38645820 - 38645887
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtc-ataatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||| ||||| ||||||| ||||||| | ||||||| |||||    
T  38645820 gaatttgtgaggaatttcattttttccgtcaataatttccctcgctaattttgctttttctagtagtg 38645887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 4627149 - 4627079
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagt 71  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| ||||    
T  4627149 caagaaatttgtgaggaatttcattttttccgtcattaatttccctcgctaattttgctttttctagtagt 4627079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 38619917 - 38619987
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    |||||| |||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| ||||||||    
T  38619917 gaatttatgaggaatttcattttttccgtcattaatttccctcgctaattttgctttttctagtagtgtta 38619987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 13564986 - 13564914
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||| |||||||||| ||||||||| |||| ||||||| ||||||| | ||||||| ||||||    
T  13564986 caaggaatttgtgatgaatttcattatttccgtcactaatttccctcgctaattttgctttttctagtagtgt 13564914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 29625394 - 29625446
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  29625394 ggaatttgtgaggaatttcattttttccgtcattaatttccctcgctaatttt 29625446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 5473915 - 5473986
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||| |||||||||||||||||| |||||| |||| ||||||| ||||||| | ||||||| |||||    
T  5473915 caaggaattggtgaggaatttcatttttcccgtcactaatttccctcgctaattttgctttttctagtagtg 5473986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 9238696 - 9238641
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  9238696 caagaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 9238641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 19680490 - 19680419
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgttagt 77  Q
    |||||||||||||||||||||||||||||| |||  ||||||  ||||||| | ||||||| ||||||||||    
T  19680490 aatttgtgaggaatttcattttttccgtcactaaattccctcactaatttttctttttctagtagtgttagt 19680419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 42055463 - 42055534
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtcata-atctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||| ||||| | || ||||||| ||||||| | ||||||| |||||    
T  42055463 caaggaatttgtgaggaatttcatttttttcgtcacagatttccctcgctaattttgctttttctagtagtg 42055534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 37378691 - 37378629
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtc-ataatctccctcgttaattttacattttcta 66  Q
    ||||||||||||||||||||||||||||||| ||||| | ||||| ||||||| | |||||||    
T  37378691 ggaatttgtgaggaatttcattttttccgtcaataattttcctcgctaattttgctttttcta 37378629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 54539353 - 54539423
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||||| |||| | ||| | ||||||| | ||||||| |||||    
T  54539353 aaggaatttgtgaggaatttcattttttccgtcactaattttccttgctaattttgctttttctagtagtg 54539423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 12106052 - 12106119
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||| |||| ||||| ||||||||| ||| |||| ||||||| ||||||||| |||||||||||||    
T  12106052 gaatttatgagaaattttattttttccatcaataatttccctcgctaattttactttttctaatagtg 12106119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 18714968 - 18715039
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||| ||||||||||||| | || ||||||| |||| || | ||||||| |||||    
T  18714968 caaggaatttgtgaggaattttattttttccgtcacttatttccctcgctaatattgctttttctagtagtg 18715039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 24682395 - 24682328
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagt 71  Q
    |||||||||||||||||| ||||||||||||| |||| ||||||  ||||||| | ||||||| ||||    
T  24682395 ggaatttgtgaggaattttattttttccgtcattaatttccctccctaatttttctttttctagtagt 24682328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 30269054 - 30268987
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||| ||||||||||||||||||||||| | || ||||||| ||||||| | ||||||| ||||||    
T  30269054 aatttgcgaggaatttcattttttccgtcactgatttccctcgctaattttgctttttctagtagtgt 30268987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 30283135 - 30283202
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||| ||||||||||||||||||||||| | || ||||||| ||||||| | ||||||| ||||||    
T  30283135 aatttgcgaggaatttcattttttccgtcactgatttccctcgctaattttgctttttctagtagtgt 30283202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 30568066 - 30568015
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    ||||||||||||||||||||||||||||||| |||| || |||| |||||||    
T  30568066 gaatttgtgaggaatttcattttttccgtcactaatttcgctcgctaatttt 30568015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 27040091 - 27040025
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||  |||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  27040091 aatttgtgaggaattttcttttttccgtcactaatttccctcgctaattttgctttttctagtagtg 27040025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 12072028 - 12072100
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||| ||| |||||||||||||||  ||| |||| || |||| ||||||| | ||||||||||||||    
T  12072028 caaggaatttatgaagaatttcattttttcgatcactaatttcgctcgctaattttgctttttctaatagtgt 12072100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 13028887 - 13028815
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| ||||||||||||||| |||||||||||||| |||| | ||||| ||| ||| | ||||||| ||||||    
T  13028887 caagaaatttgtgaggaattgcattttttccgtcactaattttcctcgctaagtttgctttttctagtagtgt 13028815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 19269935 - 19269861
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||||||||||||    
T  19269935 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctaatagtgtta 19269861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 8110403 - 8110484
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgttagttgtta 82  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||| | ||||||| ||||||| |||||||    
T  8110403 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcactaattttgctttttctagtagtgtttgttgtta 8110484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 25882638 - 25882706
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||||||||||    
T  25882638 gaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctaatagtgt 25882706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 8428235 - 8428306
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||  ||||||| |||||    
T  8428235 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttattttttctagtagtg 8428306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 21816785 - 21816856
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  21816785 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttttctttttctagtagtg 21816856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 43329834 - 43329763
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  43329834 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 43329763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 48404924 - 48404995
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  48404924 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 48404995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 26390705 - 26390631
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    ||||||||||||||||||||||||||||||||||| |||| || |||| ||||||| | ||||||| ||||||||    
T  26390705 caaggaatttgtgaggaatttcattttttccgtcactaatttctctcgctaattttgctttttctagtagtgtta 26390631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 13921389 - 13921461
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| | ||||| ||||||| | ||||||| ||||||    
T  13921389 caaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttctagtagtgt 13921461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 29956439 - 29956507
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||| ||||||| |||||    
T  29956439 ggaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttactttttctagtagtg 29956507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 30005594 - 30005662
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||| ||||||||| ||||||| |||||    
T  30005594 ggaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttactttttctagtagtg 30005662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 5261001 - 5261072
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||| | ||||||| |||||    
T  5261001 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcactaattttgctttttctagtagtg 5261072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 17762706 - 17762761
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  17762706 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 17762761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 18104598 - 18104527
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtc-ataatctccctcgttaattttacattttctaatagtgtta 75  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||| ||||||| | ||||||| ||||||||    
T  18104598 ggaatttgtgaggaatttaattttttccgtcaataatttccctcgctaattttgctttttctagtagtgtta 18104527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 19064026 - 19064081
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  19064026 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 19064081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 19223513 - 19223584
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||| | ||||||| |||||    
T  19223513 caaggaatttgtgaggaatttcattttttccgtcaccaatttccctcgctaattttgctttttctagtagtg 19223584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 26098877 - 26098948
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||| ||| |||| ||||||| ||||||| | ||||||| |||||    
T  26098877 caaggaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttgctttttctagtagtg 26098948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 27449156 - 27449223
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  27449156 gaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 27449223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 28859655 - 28859712
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttac 58  Q
    ||||||||||||||||||||||||||||||||||| |||| | ||||| |||||||||    
T  28859655 caaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttac 28859712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 29236115 - 29236179
Alignment:
Q  9 tttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||| ||||||||||||||||||| |||| ||||||| ||||||| | |||||||||||||    
T  29236115 tttgtgagaaatttcattttttccgtcactaatttccctcgctaattttgctttttctaatagtg 29236179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 9652647 - 9652714
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||||||||||||||||||| |||| |||||||  |||||| | ||||||| ||||||    
T  9652647 aatttgtgaggaatttcattttttccgtcactaatttccctcgccaattttgctttttctagtagtgt 9652714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 10941736 - 10941665
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||   ||||||| | ||||||| |||||    
T  10941736 caaggaatttgtgaggaatttcattttttccgtcactaatttcccttactaattttgctttttctagtagtg 10941665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 13905109 - 13905034
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgttag 76  Q
    |||| |||||||||||||||||||||||||||||| |||| || |||  ||||||| | ||||||| |||||||||    
T  13905109 caagaaatttgtgaggaatttcattttttccgtcactaatttcgctctctaattttgctttttctagtagtgttag 13905034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 18380088 - 18380159
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||| ||||||||| |||||||||||||||||||| | || ||||||| ||||||||| ||||||| |||||    
T  18380088 caagaaatttgtgaagaatttcattttttccgtcactgatttccctcgctaattttactttttctagtagtg 18380159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 18091613 - 18091563
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  18091613 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 18091563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 19545574 - 19545608
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca 36  Q
    |||||||||||||||||||||||||||||||||||    
T  19545574 caaggaatttgtgaggaatttcattttttccgtca 19545608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 29704098 - 29704048
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  29704098 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 29704048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 1311030 - 1310957
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    ||||||||||||||||| ||||||||||||||||| |||| | ||| | ||||||| | ||||||| |||||||    
T  1311030 caaggaatttgtgaggattttcattttttccgtcactaattttccttgctaattttgctttttctagtagtgtt 1310957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 8546312 - 8546373
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttct 65  Q
    |||||||||||||||||||||||||||||||| |||| | ||||| ||||||| | ||||||    
T  8546312 ggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttct 8546373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 29451160 - 29451213
Alignment:
Q  4 aggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||| |||| ||||||||||||||||||| |||| |||||||||||||||    
T  29451160 aggaatttatgagaaatttcattttttccgtcactaatttccctcgttaatttt 29451213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 11219205 - 11219257
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||| |||||||    
T  11219205 ggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaatttt 11219257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 1745558 - 1745504
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||||||||||||||| |||||||||| |||| ||||||| |||||||    
T  1745558 caaggaatttgtgaggaatttcat-ttttccgtcactaatttccctcgctaatttt 1745504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 37
Target Start/End: Complemental strand, 21490105 - 21490070
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtcat 37  Q
    ||||||||||||||| ||||||||||||||||||||    
T  21490105 caaggaatttgtgagaaatttcattttttccgtcat 21490070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 31250152 - 31250223
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||| ||||||| |||||||| ||||||||||||| |||||| ||||  ||||||| ||||||||| |||||    
T  31250152 caagaaatttgtaaggaattttattttttccgtcactaatcttcctccctaattttgcattttctagtagtg 31250223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 47263336 - 47263265
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||| |||||||| ||||  ||| ||| ||||||||||| | ||||||| |||||    
T  47263336 caaggaatttgtgaggaatttaattttttctgtcaccaatttccttcgttaattttgctttttctagtagtg 47263265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 6088299 - 6088265
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca 36  Q
    |||||||||| ||||||||||||||||||||||||    
T  6088299 caaggaatttctgaggaatttcattttttccgtca 6088265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 11915822 - 11915892
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagt 71  Q
    |||| ||||| ||||||||||||| |||||||||| |||| ||||||| ||||||| | ||||||| ||||    
T  11915822 caagaaatttatgaggaatttcatattttccgtcactaatttccctcgctaattttgctttttctagtagt 11915892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 23773541 - 23773575
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca 36  Q
    |||||||||||||||||||||||||| ||||||||    
T  23773541 caaggaatttgtgaggaatttcatttcttccgtca 23773575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 6718779 - 6718808
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca 36  Q
    ||||||||||||||||||||||||||||||    
T  6718779 aatttgtgaggaatttcattttttccgtca 6718808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 11085409 - 11085341
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||| |||||||||||||||||||||| | | || || |||| ||||||||| ||||||| ||||||    
T  11085409 gaatttatgaggaatttcattttttccgttactgatttctctcgctaattttactttttctagtagtgt 11085341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 74
Target Start/End: Original strand, 618362 - 618435
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | |||||||||||||||    
T  618362 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctaatagtgtt 618435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 7888865 - 7888936
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtc-ataatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||| | ||||||| |||||    
T  7888865 caaggaatttgtgaggaatttcattttttccgtcaataatttccctcgctaattttgctttttctagtagtg 7888936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 16631945 - 16631874
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  16631945 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttttctttttctagtagtg 16631874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 26708656 - 26708585
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||| || |||| ||||||| ||||||| ||||||||| |||||    
T  26708656 caaggaatttgtgaggaatttcattttttccggcactaatttccctcgctaattttgcattttctagtagtg 26708585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 26978390 - 26978319
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||| || |||| ||||||| ||||||| ||||||||| |||||    
T  26978390 caaggaatttgtgaggaatttcattttttccggcactaatttccctcgctaattttgcattttctagtagtg 26978319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 38837742 - 38837671
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  38837742 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 38837671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 75
Target Start/End: Complemental strand, 746939 - 746865
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||  ||||||||    
T  746939 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttcttgtagtgtta 746865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 4125254 - 4125188
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||| |||||    
T  4125254 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttactttttctagtagtg 4125188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 16121910 - 16121837
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    ||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||||| | ||||||| |||||||    
T  16121910 caaggaatttgtgaggaattttattttttccgtcactaatttccctcgctaattttgctttttctagtagtgtt 16121837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 28265543 - 28265474
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||||||||||||||||||||| |||| | ||||| ||||||||| ||||||| ||||||    
T  28265543 ggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttactttttctagtagtgt 28265474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 35620414 - 35620343
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||||| | ||||||||||||||    
T  35620414 caaggaatttgtgaggaattt-attttttccgtcactaatttccctcgctaattttgctttttctaatagtgt 35620343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 12045795 - 12045866
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  12045795 caagaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 12045866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 25652653 - 25652583
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||| |||| | || ||||||| ||||||| | |||||||||||||    
T  25652653 aaggaatttgtgaggaatttcattttttctgtcactgatttccctcgctaattttgctttttctaatagtg 25652583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 17036483 - 17036406
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgttagtt 78  Q
    ||||||||||||||||||||| |||| |||||||| ||||||| |||  ||||||| ||||||||| |||||| ||||    
T  17036483 caaggaatttgtgaggaattttatttcttccgtcactaatctcgctccctaattttgcattttctagtagtgtaagtt 17036406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 10494805 - 10494877
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||  ||| | ||||||| ||||||    
T  10494805 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctacatttgctttttctagtagtgt 10494877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 17039702 - 17039630
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| | ||||  ||||||| | ||||||| ||||||    
T  17039702 caaggaatttgtgaggaatttcattttttccgtcactaattttcctcactaattttgctttttctagtagtgt 17039630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 36196469 - 36196533
Alignment:
Q  9 tttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  36196469 tttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 36196533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 2472785 - 2472714
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| ||  ||||||| | ||||||| |||||    
T  2472785 caaggaatttgtgaggaatttcattttttccgtcactaatttccttcactaattttgctttttctagtagtg 2472714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 20188012 - 20187941
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||| ||||||||||||| |||| ||| ||| ||||||| | ||| |||||||||    
T  20188012 caaggaatttgtgaggaattttattttttccgtcactaatttccttcgctaattttgcttttgctaatagtg 20187941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 8108926 - 8108860
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||| |||| ||||||  ||||||| | ||||||| |||||    
T  8108926 aatttgtgaggaatttcattttttccgtcactaatttccctctctaattttgctttttctagtagtg 8108860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 17772039 - 17771969
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagt 71  Q
    |||||||||| |||||||||||||||||||||||| |||| ||||||| | ||||| | ||||||| ||||    
T  17772039 caaggaatttttgaggaatttcattttttccgtcactaatttccctcgctgatttttctttttctagtagt 17771969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 23975708 - 23975758
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  23975708 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 23975758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 12328297 - 12328224
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    |||| |||||||||||||||||||||||||||| | |||| ||||||  ||||||| | ||||||| |||||||    
T  12328297 caagaaatttgtgaggaatttcattttttccgttactaatttccctcactaattttgctttttctagtagtgtt 12328224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 17986798 - 17986862
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    ||||||||||||| |||||||||||||||||||| |||| || |||  ||||||||| |||||||    
T  17986798 aaggaatttgtgaagaatttcattttttccgtcactaatttctctcactaattttactttttcta 17986862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 24138912 - 24138840
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| |||||||||| |||||||||||||||||||  ||| | ||||| ||||||| | ||||||||||||||    
T  24138912 caagcaatttgtgagaaatttcattttttccgtcaccaattttcctcgctaattttgctttttctaatagtgt 24138840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 8886922 - 8886851
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||| |||||  ||| | ||||| ||||||| | ||||||| |||||    
T  8886922 caaggaatttgtgaggaatttcatttttttcgtcacaaattttcctcgctaattttgctttttctagtagtg 8886851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 15061046 - 15061105
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttct 65  Q
    ||||||||||||||||||||||||| |||| |||| ||||||| ||||||| | ||||||    
T  15061046 aatttgtgaggaatttcattttttcggtcactaatttccctcgctaattttgctttttct 15061105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 20959577 - 20959648
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||||||||| ||||||||||||| | || | ||||  ||||||||| ||||||| ||||||    
T  20959577 aaggaatttgtgaggaattttattttttccgtcagtgattttcctccctaattttactttttctagtagtgt 20959648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 36716267 - 36716216
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    ||||||||||||||||||||||||||| ||| |||| ||||||| |||||||    
T  36716267 gaatttgtgaggaatttcattttttccatcactaatttccctcgctaatttt 36716216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 7003798 - 7003729
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||  |||||||||||| |||| ||||||| |||||||   ||||||| ||||||    
T  7003798 ggaatttgtgaggaattttcttttttccgtcactaatttccctcgctaattttgttttttctagtagtgt 7003729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 36597411 - 36597374
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtcataa 39  Q
    ||||||||||||||||||||| || |||||||||||||    
T  36597411 caaggaatttgtgaggaattttatgttttccgtcataa 36597374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 5982713 - 5982785
Alignment:
Q  2 caaggaatttgtgaggaatttca-ttttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||| || |||||||||||| |||| ||||||| | ||||| | ||||||| |||||    
T  5982713 caaggaatttgtgaggaattccatttttttccgtcactaatttccctcgctgattttgctttttctagtagtg 5982785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 1842962 - 1843034
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||| ||||||    
T  1842962 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgttaattttgctttttctagtagtgt 1843034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 3872258 - 3872187
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  3872258 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 3872187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 18217897 - 18217968
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  18217897 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 18217968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 22486462 - 22486533
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  22486462 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 22486533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 31425578 - 31425511
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | |||||||||||||    
T  31425578 gaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctaatagtg 31425511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 7733383 - 7733305
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgttagttg 79  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||  | ||||||| ||||| ||||||    
T  7733383 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttcgctttttctagtagtgatagttg 7733305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 23539303 - 23539371
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  23539303 ggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 23539371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 15014475 - 15014404
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||||||||| |||||||||||||  ||| ||||||| ||||||||| ||||||| ||||||    
T  15014475 aaggaatttgtgaggaattttattttttccgtcaccaatttccctcgctaattttactttttctagtagtgt 15014404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 20429538 - 20429605
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||||||||||||||||||| |||| ||||| ||||||||| | ||||||| ||||||    
T  20429538 aatttgtgaggaatttcattttttccgtcactaatttcccttgttaattttgctttttctagtagtgt 20429605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 21917405 - 21917334
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||| | ||||||| |||||    
T  21917405 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcactaattttgctttttctagtagtg 21917334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 27806086 - 27806157
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| | ||||| ||||||| | ||||||| |||||    
T  27806086 caaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttctagtagtg 27806157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 47523717 - 47523650
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||  ||||||| |||||    
T  47523717 gaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttattttttctagtagtg 47523650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 6849281 - 6849211
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||| ||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  6849281 aaggaatttgtgaggaatttcattttctccgtcactaatttccctcgctaattttgctttttctagtagtg 6849211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 23699891 - 23699825
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  23699891 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttttctttttctagtagtg 23699825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 48933207 - 48933277
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    |||||||||||||||||| ||||||||||||| |||| | ||||| ||||||| | |||||||||||||||    
T  48933207 ggaatttgtgaggaattttattttttccgtcactaattttcctcgctaattttgctttttctaatagtgtt 48933277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 3904549 - 3904477
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| |||||| ||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| ||||||    
T  3904549 caagaaatttgcgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtgt 3904477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 9698609 - 9698537
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||| |||||||||| ||||||||| |||| ||||||| ||||||| | ||||||| ||||||    
T  9698609 caaggaatttgtgatgaatttcattatttccgtcactaatttccctcgctaattttgctttttctagtagtgt 9698537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 11036580 - 11036647
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||||||||||||||||||| |||| ||||| | ||||||| | ||||||| ||||||    
T  11036580 aatttgtgaggaatttcattttttccgtcactaatttcccttgctaattttgctttttctagtagtgt 11036647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 21623089 - 21623136
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcg 48  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||    
T  21623089 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcg 21623136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 23232111 - 23232178
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||| |||| ||||||  ||||||| | ||||||| |||||    
T  23232111 gaatttgtgaggaatttcattttttccgtcactaatttccctctctaattttgctttttctagtagtg 23232178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 23577260 - 23577189
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| || |||| | ||||| | ||||||| |||||    
T  23577260 caaggaatttgtgaggaatttcattttttccgtcactaatttctctcgctgatttttctttttctagtagtg 23577189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 23750807 - 23750752
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||| |||||||    
T  23750807 caaggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaatttt 23750752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 24605910 - 24605977
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| | ||||| | ||||||| |||||    
T  24605910 gaatttgtgaggaatttcattttttccgtcactaatttccctcgctgatttttctttttctagtagtg 24605977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 28800946 - 28801017
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||| ||||||||||||||||||||||||| |||| |||| ||||||| ||||||| | ||||||| |||||    
T  28800946 caagaaatttgtgaggaatttcattttttctgtcactaatttccctcgctaattttgctttttctagtagtg 28801017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 20174093 - 20174143
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  20174093 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 20174143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 15969856 - 15969924
Alignment:
Q  6 gaatttgtgaggaatttca-ttttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||| ||||||| |||||||||||| |||| |||||| |||||||||| ||||||| |||||    
T  15969856 gaatttgtgagaaatttcatttttttccgtcactaatatccctcattaattttactttttctagtagtg 15969924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 2650894 - 2650827
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||||||||||||||||||| |||  ||||||  ||||||| | ||||||| ||||||    
T  2650894 aatttgtgaggaatttcattttttccgtcactaaattccctcactaatttttctttttctagtagtgt 2650827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 10050907 - 10050873
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca 36  Q
    ||||||||||||||| |||||||||||||||||||    
T  10050907 caaggaatttgtgagaaatttcattttttccgtca 10050873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 38057700 - 38057774
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    ||||||||||||||||||||| ||||||||| ||| |||| | ||||||| ||||| | |||| || ||||||||    
T  38057700 caaggaatttgtgaggaattttattttttccatcactaattttcctcgttgattttgctttttgtagtagtgtta 38057774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 45664836 - 45664870
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca 36  Q
    |||||||||||||||||||||||||||||| ||||    
T  45664836 caaggaatttgtgaggaatttcattttttctgtca 45664870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 37135353 - 37135284
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||| |||||||||||||||||||||||| |||| ||||||  |||||||   ||||||| ||||||    
T  37135353 ggaatttatgaggaatttcattttttccgtcactaatttccctcactaattttgttttttctagtagtgt 37135284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 42926486 - 42926417
Alignment:
Q  7 aatttgtgaggaatttcatt-ttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    |||||||||||||||||||| |||||||||| |||| | ||||| ||||||||  ||||||| |||||||    
T  42926486 aatttgtgaggaatttcatttttttccgtcactaattttcctcgctaattttattttttctagtagtgtt 42926417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 2093422 - 2093362
Alignment:
Q  13 tgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||| |||| ||||||| | ||||| | ||||||| |||||    
T  2093422 tgaggaatttcattttttccgtcactaatttccctcgctgatttttctttttctagtagtg 2093362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 39979695 - 39979623
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||| || ||||||||||  ||| ||||||  ||||||| | ||| ||||||||||    
T  39979695 caaggaatttgtgaggaattttatgttttccgtcacaaatttccctccctaattttgcttttcctaatagtgt 39979623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 45839360 - 45839431
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||| |||||    
T  45839360 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgttaattttgctttttctagtagtg 45839431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 4340475 - 4340549
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||| | ||||||||||||||||    
T  4340475 caaggaatttgtgaggaatttcattttttccgtcactaatttcccttgctaattttgctttttctaatagtgtta 4340549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 28229526 - 28229453
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||||    
T  28229526 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtgtt 28229453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 19865312 - 19865387
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgttag 76  Q
    ||||||||||||||| ||||||||||||||||||| |||| | ||||| ||||||||| ||||||| |||||||||    
T  19865312 caaggaatttgtgagaaatttcattttttccgtcactaattttcctcgctaattttactttttctagtagtgttag 19865387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 46790072 - 46790142
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| ||||||||    
T  46790072 gaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtgtta 46790142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 6459285 - 6459357
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||  | ||||||| ||||||    
T  6459285 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttcgctttttctagtagtgt 6459357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 23457970 - 23458038
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtc-ataatctccctcgttaattttacattttctaatagtgtt 74  Q
    ||||||||||||||||||||||||||||| ||||| | ||||| ||||||||| ||||||| |||||||    
T  23457970 aatttgtgaggaatttcattttttccgtcaataattttcctcgctaattttactttttctagtagtgtt 23458038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 8941065 - 8940994
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  8941065 caaggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 8940994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 9110046 - 9109975
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  9110046 caagaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 9109975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 12720877 - 12720948
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  12720877 caaggaatttgtgaggaattttattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 12720948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 46339515 - 46339444
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||||||||||||||||||||||| |||| | ||||| ||||||| | ||||||| ||||||    
T  46339515 aaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttctagtagtgt 46339444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 12161887 - 12161953
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtc-ataatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||| ||||| | ||||| ||||||||| ||||||| |||||    
T  12161887 aatttgtgaggaatttcattttttccgtcaataattttcctcgctaattttactttttctagtagtg 12161953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 15243153 - 15243227
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    ||||||||||||||||||||||||||||||||||| |||| || |||| | ||||| | ||||||| ||||||||    
T  15243153 caaggaatttgtgaggaatttcattttttccgtcactaatttctctcgctgatttttctttttctagtagtgtta 15243227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 17661123 - 17661189
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||| ||||||||||||| |||| ||| ||||||||||| | |||||||||||||    
T  17661123 aatttgtgaggaattttattttttccgtcactaatttccgtcgttaattttgctttttctaatagtg 17661189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 50092364 - 50092298
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  50092364 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttttctttttctagtagtg 50092298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 52183751 - 52183817
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||| ||||||||||||| |||| ||||||||||||||| | ||||||| |||||    
T  52183751 aatttgtgaggaattttattttttccgtcattaatttccctcgttaattttgctttttctagtagtg 52183817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 6412124 - 6412051
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    |||| |||||||||||||||||||||||||||| | |||| ||||||| ||||||| | ||||||| |||||||    
T  6412124 caagaaatttgtgaggaatttcattttttccgttactaatttccctcgctaattttgctttttctagtagtgtt 6412051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 38531240 - 38531167
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    |||||||||||||||||||| ||||||||||||| | || ||||||  ||||||||| ||||||| ||||||||    
T  38531240 aaggaatttgtgaggaattttattttttccgtcacttatttccctccctaattttactttttctagtagtgtta 38531167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 46786029 - 46785956
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    ||||||| ||||||| ||||||||||||||||||| |||| ||||||| ||||||| | |||||||||| ||||    
T  46786029 caaggaacttgtgagaaatttcattttttccgtcactaatttccctcgctaattttgctttttctaatattgtt 46785956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 20408228 - 20408160
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||| |||| | ||||| ||||||| | ||||||| |||||    
T  20408228 ggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttctagtagtg 20408160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 41120808 - 41120736
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| |||||||||||||||||||||||||| ||| |||| ||||||| ||||||| | ||||||| ||||||    
T  41120808 caagaaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttgctttttctattagtgt 41120736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 22158875 - 22158934
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttct 65  Q
    ||||||||||||||||||||||||| |||| |||| ||||||| ||||||||| ||||||    
T  22158875 aatttgtgaggaatttcattttttctgtcactaatttccctcgctaattttactttttct 22158934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 18890615 - 18890549
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||| ||| |||| ||||||| ||||||| | |||||| ||||||    
T  18890615 aatttgtgaggaatttcattttttccatcactaatttccctcgctaattttgctttttctgatagtg 18890549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 9464174 - 9464235
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttct 65  Q
    |||||||||||||||||||||||||||||||| |||| ||| ||  ||||||||| ||||||    
T  9464174 ggaatttgtgaggaatttcattttttccgtcactaatttccgtcactaattttactttttct 9464235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 17200077 - 17200008
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    ||||||||||||||||||||||||||||||| | || ||||||| |||||||   ||||||| |||||||    
T  17200077 gaatttgtgaggaatttcattttttccgtcactgatttccctcgctaattttgttttttctagtagtgtt 17200008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 20290386 - 20290327
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    ||||||||||||||||||| |||||||||| |||| ||||||| ||||||||| |||||||    
T  20290386 aatttgtgaggaatttcat-ttttccgtcactaatttccctcgctaattttactttttcta 20290327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 9177168 - 9177223
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||| |||||||||||||||||||||||||||| | |||| ||||||| |||||||    
T  9177168 caagaaatttgtgaggaatttcattttttccgttactaatttccctcgctaatttt 9177223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 22603620 - 22603687
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||| ||| |||| ||||| | ||||||| | ||||||| |||||    
T  22603620 gaatttgtgaggaatttcattttttccatcactaatttcccttgctaattttgctttttctagtagtg 22603687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 32046944 - 32046978
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca 36  Q
    |||| ||||||||||||||||||||||||||||||    
T  32046944 caagaaatttgtgaggaatttcattttttccgtca 32046978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 41359060 - 41359090
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca 36  Q
    |||||||||||||||||||||||||||||||    
T  41359060 gaatttgtgaggaatttcattttttccgtca 41359090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 51973503 - 51973565
Alignment:
Q  13 tgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    |||||||||||||||||||||| | |||| ||||||| ||||||| | ||||||| |||||||    
T  51973503 tgaggaatttcattttttccgttactaatttccctcgctaattttgctttttctagtagtgtt 51973565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 16913647 - 16913614
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca 36  Q
    |||||||||||||||||||| |||||||||||||    
T  16913647 aaggaatttgtgaggaattttattttttccgtca 16913614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 14760939 - 14761007
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||| || ||||||||||  ||| |||||| |||||||| | ||||||| ||||||    
T  14760939 gaatttgtgaggaattttatgttttccgtcacaaatttccctctttaattttgctttttctagtagtgt 14761007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 29093624 - 29093552
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgt-cataatctccctcgttaattttacattttctaatagtgtt 74  Q
    |||||| ||||||||||||| |||||||| || | || | |||||| |||||||||| ||||||| |||||||    
T  29093624 aaggaacttgtgaggaattttattttttcggtccttagtttccctccttaattttactttttctagtagtgtt 29093552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 50845401 - 50845329
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||| || ||||||||||  ||| ||||||  ||||||| | ||||||| ||||||    
T  50845401 caaggaatttgtgaggaattttatgttttccgtcacaaatttccctccctaattttgctttttctagtagtgt 50845329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 22579416 - 22579346
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||||||||||||    
T  22579416 gaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctaatagtgtta 22579346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 16250868 - 16250792
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgttagttgtta 82  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||| ||||| || ||||||    
T  16250868 aatttgtgaggaatttcattttttccgtcactaatttccctcgttaattttgctttttctagtagtgataattgtta 16250792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 24661080 - 24661008
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| ||||||    
T  24661080 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtgt 24661008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 33250779 - 33250707
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||   ||||||| ||||||    
T  33250779 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgttaattttgtcttttctagtagtgt 33250707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 2669377 - 2669448
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| | ||||||| |||||    
T  2669377 caaggaatttgtgaggaatttcatttttttcgtcactaatttccctcgttaattttgctttttctagtagtg 2669448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 9893031 - 9893102
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  9893031 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 9893102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 15448454 - 15448524
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  15448454 aaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 15448524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 20182218 - 20182284
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||| |||||    
T  20182218 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttactttttctagtagtg 20182284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 22153773 - 22153707
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||| |||||    
T  22153773 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttactttttctagtagtg 22153707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 25398070 - 25398135
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | |||||||    
T  25398070 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttttctttttcta 25398135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 6978345 - 6978417
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||||| ||||||| | ||| ||||||||||    
T  6978345 caaggaatttgtgaggaatttcattttttccgtaactaatttccctcgctaattttgcttttcctaatagtgt 6978417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 15364529 - 15364457
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||| | ||||||| ||||||    
T  15364529 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcactaattttgctttttctagtagtgt 15364457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 15961478 - 15961406
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| ||||||| |||||||||||||||||||||| |||| ||||||||||||||| | ||||||| ||||||    
T  15961478 caagaaatttgtaaggaatttcattttttccgtcactaatttccctcgttaattttgctttttctagtagtgt 15961406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 28364983 - 28365051
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| ||||||    
T  28364983 gaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtgt 28365051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 28668168 - 28668240
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||| ||||||||||||| | || ||||||| ||||||||| ||||||| ||||||    
T  28668168 caaggaatttgtgaggaattttattttttccgtcactgatttccctcgctaattttactttttctagtagtgt 28668240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 495698 - 495627
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||| | ||||||| |||||    
T  495698 caaggaatttgtgaggaatttcattttttccgtcactaatttcccttgctaattttgctttttctagtagtg 495627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 6598532 - 6598603
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  6598532 caagtaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 6598603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 12160913 - 12160846
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||||||||||||| ||||| |||| ||||||| ||||||||| ||||||| ||||||    
T  12160913 aatttgtgaggaatttcattttttacgtcactaatttccctcgctaattttactttttctagtagtgt 12160846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 26224496 - 26224567
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  26224496 caagaaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 26224567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 6605562 - 6605496
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  6605562 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 6605496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 10458832 - 10458902
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagt 71  Q
    |||||||||||||||||| |||||||||||||||| |||| ||||||  ||||||||| ||||||| ||||    
T  10458832 caaggaatttgtgaggaaattcattttttccgtcactaatttccctcactaattttactttttctagtagt 10458902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 12351656 - 12351586
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||| ||||||||||||| |||| |||||| |||||| ||| ||||||| |||||    
T  12351656 aaggaatttgtgaggaattttattttttccgtcactaatttccctccttaattatactttttctagtagtg 12351586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 1939308 - 1939239
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    ||||||||||||||||||||||||| |||| |||| ||||||| ||||||| | ||||||| ||||||||    
T  1939308 aatttgtgaggaatttcattttttcggtcactaatttccctcgctaattttgctttttctagtagtgtta 1939239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 12200762 - 12200827
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||| | |||||||    
T  12200762 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcactaattttgctttttcta 12200827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 11049822 - 11049750
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| | |||||||   ||||||| ||||||    
T  11049822 caaggaatttgtgaggaatttcattttttccgtcactaatttcccttgctaattttgttttttctagtagtgt 11049750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 21141012 - 21141072
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    |||||| ||||||||||||||||||||||| |||| ||||||||||||||| | |||||||    
T  21141012 aatttgggaggaatttcattttttccgtcactaatttccctcgttaattttgctttttcta 21141072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 15509229 - 15509288
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttct 65  Q
    |||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||    
T  15509229 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttttctttttct 15509288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 30834026 - 30833960
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||| ||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  30834026 aattagtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 30833960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 5360482 - 5360547
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagt 71  Q
    |||||||||||||||| ||||||||||||| |||| ||||||| ||||||| | ||||||| ||||    
T  5360482 aatttgtgaggaattttattttttccgtcactaatttccctcgctaattttgctttttctagtagt 5360547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 5250207 - 5250279
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| ||||| |||||||||||||||||||||||| |||| ||||||| | ||||| | ||||||| ||||||    
T  5250207 caagaaatttatgaggaatttcattttttccgtcactaatttccctcgctgatttttctttttctagtagtgt 5250279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 21990245 - 21990174
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| ||||||||||||||||||| |||||||||| |||| ||||||| ||||||| | ||||||| ||||||    
T  21990245 caagaaatttgtgaggaatttcat-ttttccgtcattaatttccctcgctaattttgctttttctagtagtgt 21990174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 26939655 - 26939726
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||| ||||||||||||||||||||||||  |||| |||| ||||||  ||||||||| ||||||| |||||    
T  26939655 caagaaatttgtgaggaatttcattttttttgtcactaatttccctcagtaattttactttttctagtagtg 26939726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 12499289 - 12499339
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||||||||||||||||||||| || | ||||||| |||||||    
T  12499289 aatttgtgaggaatttcattttttccgtcactactttccctcgctaatttt 12499339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 12506618 - 12506668
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||||||||||||||||||||| || | ||||||| |||||||    
T  12506618 aatttgtgaggaatttcattttttccgtcactactttccctcgctaatttt 12506668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 12509612 - 12509562
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||||||||||||||||||||| || | ||||||| |||||||    
T  12509612 aatttgtgaggaatttcattttttccgtcactactttccctcgctaatttt 12509562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 13145070 - 13145100
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttcc 32  Q
    |||||||||||||||||||||||||||||||    
T  13145070 caaggaatttgtgaggaatttcattttttcc 13145100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 2992683 - 2992736
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatt 54  Q
    ||||||||||||||||||||| ||||||||| ||| |||| ||||||| |||||    
T  2992683 caaggaatttgtgaggaattttattttttccatcactaatttccctcgctaatt 2992736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 5192256 - 5192195
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    ||||||||||||||||||||||||||| ||| |||| | ||||| ||||||| | |||||||    
T  5192256 gaatttgtgaggaatttcattttttccttcactaattttcctcgctaattttgctttttcta 5192195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 34
Target Start/End: Original strand, 27705493 - 27705522
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgt 34  Q
    ||||||||||||||||||||||||||||||    
T  27705493 ggaatttgtgaggaatttcattttttccgt 27705522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 9060163 - 9060231
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    ||||||||||| |||| ||||||||||||| |||| || ||| |||||||| | |||||| ||||||||    
T  9060163 aatttgtgagggattttattttttccgtcactaatttcgctctttaattttgctttttcttatagtgtt 9060231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 42)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 19240933 - 19241005
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| ||||||    
T  19240933 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtgt 19241005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 19314117 - 19314189
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| ||||||    
T  19314117 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtgt 19314189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 19488132 - 19488060
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| ||||||    
T  19488132 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtgt 19488060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 23752357 - 23752285
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||||| | ||||||||||||||    
T  23752357 caaggaatttgtgagaaatttcattttttccgtcactaatatccctcgctaattttgctttttctaatagtgt 23752285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 16062006 - 16061939
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| ||||||| |||||    
T  16062006 gaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttactttttctagtagtg 16061939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 24576095 - 24576024
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  24576095 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 24576024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 32247979 - 32248046
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||| |||||    
T  32247979 gaatttgtgaggaatttcattttttccgtcactaatttccctcgttaattttgctttttctagtagtg 32248046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 25000501 - 25000431
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||  ||||||||| ||||||| |||||    
T  25000501 aaggaatttgtgaggaatttcattttttccgtcactaatttccctcactaattttactttttctagtagtg 25000431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 27910834 - 27910764
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  27910834 aaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 27910764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 27957253 - 27957183
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  27957253 aaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 27957183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 24636718 - 24636791
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttac-attttctaatagtgt 73  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| | |||||||| ||||||    
T  24636718 caagaaatttgtgaggaatttcattttttccgtcactaatttccctcgttaattttgctattttctagtagtgt 24636791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 3823203 - 3823271
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||| ||||||||||||||||||| |||| ||||||| ||||||| | ||||||||||||||    
T  3823203 gaatttgtgagaaatttcattttttccgtcactaatttccctcgctaattttgctttttctaatagtgt 3823271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 4331047 - 4331115
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  4331047 ggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 4331115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 19256278 - 19256350
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| |||||||||||||||| ||||||||||||| |||| ||||||||||||||| | ||||||| ||||||    
T  19256278 caagaaatttgtgaggaattttattttttccgtcactaatttccctcgttaattttgctttttctagtagtgt 19256350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 33652633 - 33652697
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttct 65  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||    
T  33652633 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttct 33652697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 8555371 - 8555304
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  8555371 gaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 8555304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 25274663 - 25274734
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  25274663 caaggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 25274734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 42700727 - 42700656
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||||||||||||||||||||||| | || | ||||| ||||||||| ||||||| ||||||    
T  42700727 aaggaatttgtgaggaatttcattttttccgtcactgattttcctcgctaattttactttttctagtagtgt 42700656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 43431630 - 43431559
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||| | ||||||| |||||    
T  43431630 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcactaatttttctttttctagtagtg 43431559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 24193262 - 24193196
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  24193262 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 24193196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 30688002 - 30688076
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    |||||||||||||||||||||||||||||| |||| | || ||||||| ||||||| | ||||||| ||||||||    
T  30688002 caaggaatttgtgaggaatttcattttttcggtcactgatttccctcgctaattttgctttttctagtagtgtta 30688076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 18010131 - 18010067
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttct 65  Q
    ||||||||||||||||||||||||||||||||||| |||| || |||| ||||||| | ||||||    
T  18010131 caaggaatttgtgaggaatttcattttttccgtcactaatttctctcgctaattttgctttttct 18010067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 21350544 - 21350616
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| | | ||||| | ||||||| ||||||    
T  21350544 caaggaatttgtgaggaatttcattttttccgtcactaatttcccttgcttattttgctttttctagtagtgt 21350616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 25655926 - 25655858
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||| |||| ||||||  ||||||| | ||||||| |||||    
T  25655926 ggaatttgtgaggaatttcattttttccgtcactaatttccctcactaattttgctttttctagtagtg 25655858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 27869308 - 27869376
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||| ||| |||| ||||||| ||||||| | ||||||| ||||||    
T  27869308 gaatttgtgaggaatttcattttttccatcactaatttccctcgctaattttgctttttctagtagtgt 27869376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 4647821 - 4647754
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||||||||||||||||||| |||| ||||||| |||||||   ||||||| ||||||    
T  4647821 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgttttttctagtagtgt 4647754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 5670240 - 5670185
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||||||||||| |||||||||||||| |||| ||||||||| |||||    
T  5670240 caaggaatttgtgaggaattccattttttccgtcactaatttccctcgttgatttt 5670185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 11938811 - 11938881
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||| ||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  11938811 caaggaatttgtgaggaatttca-tttttccgtcactaatttccctcgctaattttgctttttctagtagtg 11938881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 13061001 - 13060930
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||||||||||||||||||||||| |||| | ||||| ||||||| | ||| ||| ||||||    
T  13061001 aaggaatttgtgaggaatttcattttttccgtcactaatttacctcgctaattttgcttttgctagtagtgt 13060930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 17810364 - 17810435
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||| |||||||||||||||||||||||||||||| |||| | ||||| ||||||| | ||||||| |||||    
T  17810364 caagaaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttctagtagtg 17810435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 9915109 - 9915047
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    |||||||||||||||||||||||||||||||| |||| || |||| ||||||| | |||||||    
T  9915109 ggaatttgtgaggaatttcattttttccgtcactaatttctctcgctaattttgctttttcta 9915047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 22939380 - 22939450
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||||| |||| ||| ||  ||||||| | ||||||| |||||    
T  22939380 aaggaatttgtgaggaatttcattttttccgtcactaatttccttcactaattttgctttttctagtagtg 22939450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 33413044 - 33412976
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||||||||||||||||||||||||||| | |||| ||||||| ||||||| | ||||||| ||||||    
T  33413044 ggaatttgtgaggaatttcattttttccgttactaatttccctcgctaatttt-ctttttctagtagtgt 33412976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 31399576 - 31399524
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||||||||||||||||| | ||| |||| |||||||||||||||    
T  31399576 ggaatttgtgaggaatttcatttttttcatcactaatttccctcgttaatttt 31399524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 40289492 - 40289420
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||| || |||||||||||||||| |||| | ||||| ||||||||  ||||||| ||||||    
T  40289492 caaggaatttgtgagaaaattcattttttccgtcactaattttcctcgctaattttaatttttctagtagtgt 40289420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 25273394 - 25273328
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||| ||||||||||| ||||| |||| ||||||||||||||| | ||||||| |||||    
T  25273394 gaatttgtgaggactttcatttttt-cgtcactaatttccctcgttaattttgctttttctagtagtg 25273328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 6817120 - 6817154
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca 36  Q
    |||| ||||||||||||||||||||||||||||||    
T  6817120 caagaaatttgtgaggaatttcattttttccgtca 6817154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 8824892 - 8824962
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||| |||||||||||| ||||||||| ||| |||| ||||||| ||||||| | ||||||| |||||    
T  8824892 aaggaatctgtgaggaatttgattttttccatcactaatttccctcgctaattttgctttttctagtagtg 8824962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 19493722 - 19493692
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca 36  Q
    |||||||||||||||||||||||||||||||    
T  19493722 gaatttgtgaggaatttcattttttccgtca 19493692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 9631474 - 9631542
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||| ||||||||||||| |||| | ||| | ||||||| | ||||||| ||||||    
T  9631474 gaatttgtgaggaattttattttttccgtcactaattttccttgctaattttgctttttctagtagtgt 9631542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 30467025 - 30466953
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| ||||| |||||||||| | ||||||||||| |||| ||||||| ||||||| | ||||||| ||||||    
T  30467025 caagaaatttatgaggaattttaatttttccgtcactaatttccctcgctaattttgctttttctagtagtgt 30466953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 32961725 - 32961797
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| ||||||||||||||||||||||||| |||| | || ||||||| ||||||| | |||| || ||||||    
T  32961725 caagaaatttgtgaggaatttcattttttctgtcactgatttccctcgctaattttgctttttttagtagtgt 32961797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 22140432 - 22140364
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||| |||||    
T  22140432 ggaatttgtgaggaatttcattttttccgtcactaatttccctcgttaattttgctttttctagtagtg 22140364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 41736236 - 41736307
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  41736236 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 41736307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 13788126 - 13788054
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| | || ||||||| ||||||| | ||||||| ||||||    
T  13788126 caaggaatttgtgaggaatttcattttttccgtcactgatttccctcgctaattttgctttttctagtagtgt 13788054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 12779668 - 12779735
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  12779668 gaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 12779735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 37552295 - 37552362
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  37552295 gaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 37552362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 44476446 - 44476375
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||| |||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  44476446 caaggaatttgtgaagaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 44476375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 20065140 - 20065074
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  20065140 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttctagtagtg 20065074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 74
Target Start/End: Complemental strand, 28841413 - 28841340
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||||| ||||||| | ||| ||| |||||||    
T  28841413 caaggaatttgtgaggaatttcattttttccgttactaatttccctcgctaattttgcttttcctagtagtgtt 28841340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 32300518 - 32300579
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttct 65  Q
    |||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||    
T  32300518 ggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttct 32300579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 43408582 - 43408510
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||  ||||||| | ||||||| ||||||    
T  43408582 caagaaatttgtgaggaatttcattttttccgtcactaatttccctcactaattttgctttttctagtagtgt 43408510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 44722997 - 44723069
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    ||||||||||| |||||||||||||||||| ||| |||| ||||||| ||||||| | ||||||| |||||||    
T  44722997 aaggaatttgtaaggaatttcattttttccatcattaatttccctcgctaattttgctttttctagtagtgtt 44723069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 1141605 - 1141664
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttct 65  Q
    |||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||    
T  1141605 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttct 1141664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 15636801 - 15636742
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttct 65  Q
    |||||||||||||||||||||||||||||| |||| ||||||| ||||||| | ||||||    
T  15636801 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttct 15636742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 27039979 - 27039908
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||| |||||||||||||||||||||||||||||| |||| ||||||  ||||||| | ||||||| |||||    
T  27039979 caagaaatttgtgaggaatttcattttttccgtcactaatttccctctctaattttgctttttctagtagtg 27039908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 28319647 - 28319580
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagt 71  Q
    |||||||||||||||||||||||||||||||| |||| ||||||  ||||||| | ||||||| ||||    
T  28319647 ggaatttgtgaggaatttcattttttccgtcactaatttccctcactaattttgctttttctagtagt 28319580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 7093637 - 7093687
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  7093637 aatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 7093687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 18551323 - 18551269
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||||||||||||||||||||||||| |||| | ||||| |||||||    
T  18551323 aaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaatttt 18551269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 32009016 - 32009089
Alignment:
Q  2 caaggaatttgtgaggaatttca-ttttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||| |||||||||||| |||| | ||||| ||||||| | ||||||| ||||||    
T  32009016 caaggaatttgtgaggaatttcatttttttccgtcactaattttcctcgctaattttgctttttctagtagtgt 32009089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 37724059 - 37723998
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    ||||||||||||||||||||||||||||||| |||| ||||||| | ||||| | |||||||    
T  37724059 gaatttgtgaggaatttcattttttccgtcactaatttccctcgctgatttttctttttcta 37723998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 14757192 - 14757120
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| |||||||||||||||||||||||||||||| |||| | | ||| ||||||| | ||||||| ||||||    
T  14757192 caagaaatttgtgaggaatttcattttttccgtcattaattttcttcgctaattttgctttttctagtagtgt 14757120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 21293779 - 21293727
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||||||||| ||||||||||||||||||| |||| ||||||| |||||||    
T  21293779 ggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaatttt 21293727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 73
Target Start/End: Complemental strand, 26243388 - 26243320
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||| |||||| ||| || |||| ||||||||||||||| | ||||||| ||||||    
T  26243388 gaatttgtgaggaattttatttttaccgccactaatttccctcgttaattttgctttttctagtagtgt 26243320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 28262433 - 28262493
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    |||||||||||||||||||||||||| ||| |||| ||||| | ||||||||| |||||||    
T  28262433 aatttgtgaggaatttcattttttccatcactaatttcccttgctaattttactttttcta 28262493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 9004378 - 9004303
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgttagt 77  Q
    ||||||||| |||| |||||||||| |||||||| |||| | ||||||||||||||  ||||||| ||||| ||||    
T  9004378 aaggaatttatgagaaatttcatttcttccgtcactaatattcctcgttaattttattttttctagtagtgatagt 9004303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 23858028 - 23857958
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||||||||||| |||| |||||| |||| ||||||| ||||||| | ||||||| |||||    
T  23858028 caaggaatttgtgaggaatttca-ttttcccgtcactaatttccctcgctaattttgctttttctagtagtg 23857958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 32185901 - 32185951
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    |||||| ||||||||||||||||||||||| |||| ||||||| |||||||    
T  32185901 aatttgcgaggaatttcattttttccgtcactaatttccctcgctaatttt 32185951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 38362338 - 38362308
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca 36  Q
    |||||||||||||||||||||||||||||||    
T  38362338 gaatttgtgaggaatttcattttttccgtca 38362308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 18609578 - 18609654
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgttagt 77  Q
    |||||||||||||||| |||  ||||| ||||||| |||| | |||| ||| |||||| ||| ||||||||||||||    
T  18609578 caaggaatttgtgagggattctattttctccgtcactaattttcctccttatttttacttttcctaatagtgttagt 18609654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 182598 - 182668
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagt 71  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||||||| ||||||| ||||    
T  182598 caaggaatttgtgagaaatttcattttttccgtcactaatttccctcgctaattttactttttctagtagt 182668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 219709 - 219775
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||| |||| ||| ||| ||||||| | ||||||| |||||    
T  219709 aatttgtgaggaatttcattttttccgtcactaatttccgtcgctaattttgctttttctagtagtg 219775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 215734 - 215701
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtc 35  Q
    ||||||||||||||||||||||||||||||||||    
T  215734 caaggaatttgtgaggaatttcattttttccgtc 215701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 9300 - 9228
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||  ||||||| | ||||||| ||||||    
T  9300 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcactaattttgctttttctagtagtgt 9228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 19671 - 19743
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||| | ||||||| ||||||    
T  19671 caaggaatttgtgaggaatttcattttttccgtcactaatttcccttgctaattttgctttttctagtagtgt 19743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 10733 - 10669
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| | |||||||    
T  10733 aaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttcta 10669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 3810 - 3882
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||||||| |||| | ||||| ||||||| | ||||||| ||||||    
T  3810 caaggaatttgtgaggaatttcattttttccgtcactaattttcctcgctaattttgctttttctagtagtgt 3882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 202842 - 202913
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||| ||||||| | ||||||| |||||    
T  202842 caaggaatttgtgagcaatttcattttttccgtcactaatttccctcgctaatttttctttttctagtagtg 202913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 274733 - 274681
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    ||||||||||| |||||||||||||||||||| |||| ||||||| |||||||    
T  274733 ggaatttgtgaagaatttcattttttccgtcactaatttccctcgctaatttt 274681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 6050 - 5995
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  6050 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 5995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 17688 - 17633
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaatttt 56  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  17688 caaggaatttgtgaggaatttcattttttccgtcactaatttccctcgctaatttt 17633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 43989 - 44059
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    ||||||||||||||||||||||||||| ||| |||| ||||||| ||||||| | ||||||| ||||||||    
T  43989 gaatttgtgaggaatttcattttttccatcactaatttccctcgctaatttttctttttctagtagtgtta 44059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 22280 - 22350
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||| | ||||||| |||||    
T  22280 aaggaatttgtgaggaatttcatttttttcgtcactaatttccctcgctaattttgctttttctagtagtg 22350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 8181 - 8116
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||||| ||||||| | |||||||    
T  8181 caaggaatttgttaggaatttcattttttccgtcattaatttccctcgctaattttgctttttcta 8116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 21913 - 21848
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||||| ||||||| | |||||||    
T  21913 caaggaatttgttaggaatttcattttttccgtcattaatttccctcgctaattttgctttttcta 21848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 84376 - 84442
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtg 72  Q
    |||||||||||||||||||||||||||||| |||| ||||| | ||||||| | ||||||| |||||    
T  84376 aatttgtgaggaatttcattttttccgtcactaatttcccttgctaattttgctttttctagtagtg 84442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 7525 - 7589
Alignment:
Q  3 aaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    ||||| ||||||| |||||||||||||||||||| |||| | ||||||||||||||| |||||||    
T  7525 aaggattttgtgaagaatttcattttttccgtcactaattttcctcgttaattttactttttcta 7589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 440031 - 440103
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| |||||||||||||||||||||||||||||| |||| | ||| | ||||||||| ||||||| ||||||    
T  440031 caagaaatttgtgaggaatttcattttttccgtcactaatattccttgctaattttactttttctagtagtgt 440103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 12724 - 12793
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtt 74  Q
    |||||| |||||||||||||||||||||||| |||| ||||||| ||||||| | ||||| | |||||||    
T  12724 gaatttatgaggaatttcattttttccgtcactaatttccctcgctaattttgctttttcaagtagtgtt 12793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 84745 - 84680
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    |||||||||||||||||||||||||||||| |||| |||| ||||||  ||||||| | |||||||    
T  84745 caaggaatttgtgaggaatttcattttttctgtcactaatttccctcactaattttgctttttcta 84680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 73
Target Start/End: Complemental strand, 15061 - 14989
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||| ||||| ||||||||||||||||||| |||| |||| ||||||| ||||||| | ||||||| ||||||    
T  15061 caagaaatttatgaggaatttcattttttcggtcactaatttccctcgctaattttgctttttctagtagtgt 14989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 26555 - 26623
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    ||||||||||||||||||||||||||||||| |||| ||| ||  ||||||| | ||||||| ||||||    
T  26555 gaatttgtgaggaatttcattttttccgtcactaatttccgtcactaattttgctttttctagtagtgt 26623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 9881 - 9952
Alignment:
Q  5 ggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgtta 75  Q
    |||||||||||| ||||||||||||||| ||| |||| || |||| ||||||| | ||||||| ||||||||    
T  9881 ggaatttgtgagaaatttcattttttccttcactaatttcactcgctaattttgctttttctagtagtgtta 9952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 39769 - 39702
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagtgt 73  Q
    |||||| ||||||||||||||||||| ||| |||| ||||||| ||||||| | ||||||| ||||||    
T  39769 aatttgggaggaatttcattttttccatcactaatttccctcgctaattttgctttttctagtagtgt 39702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 7573 - 7643
Alignment:
Q  2 caaggaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttctaatagt 71  Q
    |||| ||||| ||||||||||||| |||||||||| |||| ||||||| ||||||| | ||||||| ||||    
T  7573 caagaaatttatgaggaatttcatattttccgtcactaatttccctcgctaattttgctttttctagtagt 7643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 66
Target Start/End: Complemental strand, 74784 - 74723
Alignment:
Q  6 gaatttgtgaggaatttcattttttccgtca-taatctccctcgttaattttacattttcta 66  Q
    ||||||||||| ||||||||||||||||||| |||| ||||| | ||||||| | |||||||    
T  74784 gaatttgtgagaaatttcattttttccgtcactaatttcccttgctaattttgccttttcta 74723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 66
Target Start/End: Original strand, 6868 - 6928
Alignment:
Q  7 aatttgtgaggaatttcattttttccgtc-ataatctccctcgttaattttacattttcta 66  Q
    |||||| || ||||||||||||||||||| ||||| ||||||| ||||||| | |||||||    
T  6868 aatttgcgaagaatttcattttttccgtcaataatttccctcgctaattttgctttttcta 6928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University