View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_high_29 (Length: 293)
Name: NF3039_high_29
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 3 - 283
Target Start/End: Complemental strand, 45274340 - 45274060
Alignment:
| Q |
3 |
cattgaaaagagaaatatatacatataacattgacatatatagccagtgtgattgaaattactaattaattgattatccatgcgtgcagccaacaccgca |
102 |
Q |
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| T |
45274340 |
cattgaaaagagaaatatatacatataacattgacatatatagccagtgtgatcgaaattactaattaattgattatccatgcgtgcagccaacaccgca |
45274241 |
T |
|
| Q |
103 |
atagggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttgg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45274240 |
atagggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagctgtggcatttagaaacgtaggagatatgtctgctttgg |
45274141 |
T |
|
| Q |
203 |
tgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctg |
283 |
Q |
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| T |
45274140 |
tgggttgccatatcgtgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctg |
45274060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 281
Target Start/End: Complemental strand, 45282584 - 45282305
Alignment:
| Q |
2 |
acattgaaaagagaaatatatacatataacattgacatatatagccagtgtgattgaaattactaattaattgattatccatgcgtgcagccaacaccgc |
101 |
Q |
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| T |
45282584 |
acattgaaaagatatagatacacatataacattgacatatatagccaatgtgatcgaaattactaattaattgattatccatgaatgcagccaacaccgc |
45282485 |
T |
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| Q |
102 |
aatagggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttg |
201 |
Q |
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| T |
45282484 |
aatggggttcattggaaaggcaatgacatttgagaacacagccggtcctgatggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttg |
45282385 |
T |
|
| Q |
202 |
gtgggttgccatatcctgggttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctc |
281 |
Q |
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| T |
45282384 |
gtgggttgccatatcgtgggttaccaagacagcttgtatgttcaaagcaacagacagtactaccgcaattgtcttgtctc |
45282305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 25 - 283
Target Start/End: Complemental strand, 45293904 - 45293643
Alignment:
| Q |
25 |
atataacattgacatatata---gccagtgtgattgaaattactaattaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaagg |
121 |
Q |
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|||||||||||||| ||||| ||| ||||||| ||| |||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||| |
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| T |
45293904 |
atataacattgacacatataatagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaagg |
45293805 |
T |
|
| Q |
122 |
caatgacatttgagaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctggg |
221 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45293804 |
caatgacatttgagaacacagccggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctggg |
45293705 |
T |
|
| Q |
222 |
ttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctg |
283 |
Q |
| |
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||||||||||| ||||| ||||||| ||||||||| | ||||||||||||| || |||||| |
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| T |
45293704 |
ttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaattgtgttatctctg |
45293643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 25 - 283
Target Start/End: Complemental strand, 45302864 - 45302603
Alignment:
| Q |
25 |
atataacattgacatatata---gccagtgtgattgaaattactaattaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaagg |
121 |
Q |
| |
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|||||||||||||| ||||| ||| ||||||| ||| |||||||||||||||| |||||||| |||||||||||||||| | |||||||||||||||| |
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| T |
45302864 |
atataacattgacacatataatagccggtgtgatcgaagttactaattaattgatcatccatgcatgcagccaacaccgcattggggttcattggaaagg |
45302765 |
T |
|
| Q |
122 |
caatgacatttgagaacacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctggg |
221 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
45302764 |
caatgacatttgagaacacagccggtcctgctggtcaccaagctgtggcatttagaaaccaaggagatatgtctgctttggtgggttgccatatcctggg |
45302665 |
T |
|
| Q |
222 |
ttaccaagacagcttgtatgttcaaagcaacaggcagtactaccgcaattgtcttgtctctg |
283 |
Q |
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||||||||||| ||||| ||||||| ||||||||| | ||||||||||||| || |||||| |
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| T |
45302664 |
ttaccaagacactttgtacgttcaaaccaacaggcaattctaccgcaattgtgttatctctg |
45302603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 38 - 269
Target Start/End: Complemental strand, 45270778 - 45270547
Alignment:
| Q |
38 |
atatatagccagtgtgattgaaattactaattaattgattatccatgcgtgcagccaacaccgcaatagggttcattggaaaggcaatgacatttgagaa |
137 |
Q |
| |
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|||||||||| |||| || ||| |||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45270778 |
atatatagccggtgttatagaagttactaattaattgatcatccatgcatgcagccaacaccgcaatggggttcattggaaaggcaatgacatttgagaa |
45270679 |
T |
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| Q |
138 |
cacagccggtcctgatggtcaccaagccgtggcatttagaaacgtaggagatatgtctgctttggtgggttgccatatcctgggttaccaagacagcttg |
237 |
Q |
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|||||||||||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||| ||| |
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| T |
45270678 |
cacagccggtcctgccggtatgcaagctgtggcatttagaaacataggagatatgtctgctttggtgggttgccatatcgtaggttaccaagacactttg |
45270579 |
T |
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| Q |
238 |
tatgttcaaagcaacaggcagtactaccgcaa |
269 |
Q |
| |
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|| ||||||| ||||||||| | ||||||||| |
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| T |
45270578 |
tacgttcaaaccaacaggcaattctaccgcaa |
45270547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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