View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_high_3 (Length: 643)
Name: NF3039_high_3
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 15 - 635
Target Start/End: Original strand, 31607123 - 31607743
Alignment:
| Q |
15 |
tggatttctctagatatggctgtatacaagaagggctcattgataggttctgtccaaggaatgatgactggtctcgtttgcattactccgggtgcaggta |
114 |
Q |
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| T |
31607123 |
tggatttctctagatatggctgtatacaagaaaggctcattgataggttctgtccaaggaatgatgactggtctcgtttgcatcacaccgggtgcaggta |
31607222 |
T |
|
| Q |
115 |
aagctcacacaaaacgacacattcaatagttgcgagatataattctgaaaacttctttctaagcttacatgtccacaagtaatgacattatttttaccta |
214 |
Q |
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| T |
31607223 |
aagctcacacaaaacgacacattcagtagttgcgagatataattctgaaaacttctttctaagcttacatgtccacaagtaatgacattatttttaccta |
31607322 |
T |
|
| Q |
215 |
tgtatgtgaccaggattggtggatccttgggcagcaatattgatgggagctttgtccggctcaattccatggtacacgatgatggtgttgcacaaaagat |
314 |
Q |
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| T |
31607323 |
tgtatgtgacaaggattggtggatccatgggcagcaatattgatgggagctttgtccggttcaattccatggtacacgatgatggtgttgcacaaaaaat |
31607422 |
T |
|
| Q |
315 |
cgtcattctttcaaagtgtagatgatacattaggagtctttcacactcatgctgtggctggtattcttgggggaatcctttctggtgtgtttgccaaacc |
414 |
Q |
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| T |
31607423 |
caccattctttcaaagtgtagatgatacattaggagtctttcacactcatgctgtggctggtattcttgggggaatcctttctggtgtgtttgccaaacc |
31607522 |
T |
|
| Q |
415 |
taaacttttgaggattctctatggtccttatgggtctggcttattgtatagttattttgatgataatataggtcaaggaatcaagcaaatgtggtaccaa |
514 |
Q |
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| T |
31607523 |
taaacttttgaggattctctatggtccttatgggtctggcttattgtatagttattttgatgataatataggtcaaggaatcaagcaaatgtggtaccaa |
31607622 |
T |
|
| Q |
515 |
ttattaggagcagtttttattactatttggaatgttgttattactagtctgatttgtattcttttaaatcgctttgtgaatcttcgaatgcaagaagaag |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31607623 |
ttattaggagcagtttttattactatttggaatgttgttattactagtctgatttgtattcttttaaatcgctttgtgaatcttcgaatgcaagaagaag |
31607722 |
T |
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| Q |
615 |
agcttgaggttggtgatgatg |
635 |
Q |
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| T |
31607723 |
accttgaggttggtgatgatg |
31607743 |
T |
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