View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_high_37 (Length: 264)
Name: NF3039_high_37
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 35207511 - 35207263
Alignment:
| Q |
20 |
atttaatcataaaaattccaaaccatcttcattttcctaaaaagaaaatcagaaaattgcatagggattaaaattcctttgaccgcatcatcatataata |
119 |
Q |
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| T |
35207511 |
atttgatcataaaaattccaaaccatcttcattttcctaaaaagaaaatcagaaaattgcatagggattaaaattcctttgaccgcatcatcatataata |
35207412 |
T |
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| Q |
120 |
attgaatcatcatcattctcatt---------------ctcctgagcacacttttctaattcccctctgctccaaattcttaaatgactcctccaatcca |
204 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
35207411 |
attgaatcatcatcattctcattctcattctcattctcctcctgagcaaacttttctaattcccctctgctccaaattcttaaatga---ctccaaccca |
35207315 |
T |
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| Q |
205 |
acgccgtcccttatccttcccagcagtccacccctgcaaatccatctctgct |
256 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35207314 |
acgccgtcccttatcctttccagcagtccacccctgcaaatccatctctgct |
35207263 |
T |
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