View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3039_high_65 (Length: 224)

Name: NF3039_high_65
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3039_high_65
NF3039_high_65
[»] chr4 (5 HSPs)
chr4 (4-224)||(45638669-45638889)
chr4 (88-166)||(11962073-11962151)
chr4 (81-159)||(3567017-3567094)
chr4 (28-95)||(11962176-11962243)
chr4 (28-87)||(3567121-3567179)
[»] chr5 (15 HSPs)
chr5 (81-220)||(39701673-39701807)
chr5 (81-220)||(39702903-39703037)
chr5 (81-224)||(41051013-41051151)
chr5 (81-166)||(19934599-19934684)
chr5 (81-220)||(29526123-29526254)
chr5 (81-164)||(29527337-29527420)
chr5 (81-220)||(22950261-22950391)
chr5 (23-95)||(39701583-39701655)
chr5 (25-95)||(22950409-22950479)
chr5 (28-95)||(19139417-19139484)
chr5 (28-95)||(39702818-39702885)
chr5 (28-87)||(19934711-19934769)
chr5 (28-87)||(29526038-29526096)
chr5 (28-95)||(29527251-29527318)
chr5 (28-87)||(41050925-41050985)
[»] chr3 (17 HSPs)
chr3 (81-208)||(7197722-7197844)
chr3 (81-220)||(54994607-54994737)
chr3 (81-210)||(592505-592629)
chr3 (81-166)||(2386385-2386470)
chr3 (81-166)||(45826237-45826322)
chr3 (81-210)||(48637623-48637747)
chr3 (81-159)||(51274436-51274514)
chr3 (116-224)||(40976772-40976875)
chr3 (25-87)||(45826149-45826210)
chr3 (26-95)||(7197862-7197931)
chr3 (28-84)||(40976947-40977002)
chr3 (28-95)||(54994755-54994822)
chr3 (28-87)||(48637538-48637596)
chr3 (35-87)||(592656-592707)
chr3 (25-68)||(2386289-2386331)
chr3 (57-95)||(51274532-51274571)
chr3 (143-207)||(25184672-25184729)
[»] scaffold0026 (4 HSPs)
scaffold0026 (81-210)||(80721-80845)
scaffold0026 (81-210)||(79525-79649)
scaffold0026 (35-95)||(79667-79727)
scaffold0026 (28-84)||(80875-80930)
[»] chr1 (15 HSPs)
chr1 (81-210)||(8788618-8788742)
chr1 (81-166)||(49122171-49122256)
chr1 (81-220)||(8089804-8089934)
chr1 (81-220)||(10582698-10582828)
chr1 (81-220)||(10583904-10584034)
chr1 (81-166)||(49121982-49122067)
chr1 (92-207)||(23541068-23541176)
chr1 (101-220)||(49123260-49123370)
chr1 (24-95)||(8089715-8089786)
chr1 (28-87)||(8788533-8788591)
chr1 (28-95)||(10582846-10582913)
chr1 (28-95)||(10584052-10584119)
chr1 (28-95)||(49122274-49122341)
chr1 (28-95)||(49123408-49123475)
chr1 (30-87)||(23540880-23540938)
[»] scaffold0227 (4 HSPs)
scaffold0227 (88-220)||(11070-11197)
scaffold0227 (81-166)||(12267-12352)
scaffold0227 (28-95)||(11222-11289)
scaffold0227 (27-87)||(12379-12438)
[»] chr6 (11 HSPs)
chr6 (81-220)||(18133073-18133203)
chr6 (81-220)||(21535706-21535836)
chr6 (81-166)||(21395676-21395761)
chr6 (81-220)||(18131867-18131997)
chr6 (27-95)||(18132987-18133055)
chr6 (28-95)||(18131782-18131849)
chr6 (28-95)||(21535854-21535921)
chr6 (30-95)||(7033339-7033404)
chr6 (125-166)||(7033443-7033484)
chr6 (25-83)||(16189724-16189783)
chr6 (28-87)||(21395591-21395649)
[»] chr2 (3 HSPs)
chr2 (81-220)||(33789877-33790007)
chr2 (81-210)||(12324857-12324981)
chr2 (81-207)||(18955376-18955495)
[»] chr7 (6 HSPs)
chr7 (81-220)||(6081199-6081329)
chr7 (81-166)||(6082451-6082536)
chr7 (28-95)||(6081347-6081414)
chr7 (28-95)||(6082554-6082621)
chr7 (26-95)||(17901205-17901276)
chr7 (31-87)||(27021417-27021472)
[»] scaffold0018 (1 HSPs)
scaffold0018 (81-166)||(177948-178033)
[»] scaffold0011 (4 HSPs)
scaffold0011 (81-166)||(211751-211836)
scaffold0011 (81-220)||(205674-205804)
scaffold0011 (28-95)||(205589-205656)
scaffold0011 (28-95)||(211666-211733)
[»] chr8 (5 HSPs)
chr8 (81-210)||(40254412-40254531)
chr8 (23-95)||(26246963-26247035)
chr8 (26-87)||(2411059-2411119)
chr8 (28-95)||(40254549-40254616)
chr8 (35-95)||(21661227-21661287)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 224
Target Start/End: Original strand, 45638669 - 45638889
Alignment:
Q  4 tcattataatttcaattgtgaatgtgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaagaattcgagagattggtct 103  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45638669 tcattataatttcaattgtgaatgtgatagaaactaatatccaaagtataaactaatagtaatattacaatataatcccaagaattcgagagcttggtct 45638768  T
Q  104 ctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaactccctcctatagcagttacataga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45638769 ctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaactccctcctatagcagttacataga 45638868  T
Q  204 agtttaggtgacagcaactac 224  Q
    ||||||| |||||||||||||    
T  45638869 agtttagttgacagcaactac 45638889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 11962151 - 11962073
Alignment:
Q  88 ttcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttata 166  Q
    |||||||| ||||||| |||||||| | |||||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  11962151 ttcgagagcttggtctatccctaccaatcctttaccccaatgcctgaatacctttcttttcctctgcatcttatttata 11962073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 3567094 - 3567017
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatg-cctttcttttcctctgcatctt 159  Q
    |||||||||||| || |||||||||||||||||| ||||||| |||||||  ||||| || |||||||||||||||||||    
T  3567094 ccaagaattcgatagtttggtctctccctacctatcctttattccaatcc--gaatgccccttcttttcctctgcatctt 3567017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 11962243 - 11962176
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| |||||||||| ||| |||||||||||||| | ||||||||||||||||||| ||||||||||    
T  11962243 tgataggaactgatatcaaaa-tataaactaatagttagattacaatataatcccaagaaattcgagag 11962176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 3567179 - 3567121
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaagaa 87  Q
    ||||||||||||| ||| ||| ||||| |||||||||||||||||||| |||| ||||||    
T  3567179 tgatagaaactgagatcaaaa-tataacctaatagtaatattacaatacaatctcaagaa 3567121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 8e-45; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 39701673 - 39701807
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||    
T  39701673 ccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttat-----ttataatactaact 39701767  T
Q  181 ccctcctatagcagttacatagaagtttaggtgacagcaa 220  Q
    | ||||||||||||||||||||||||||||  ||||||||    
T  39701768 ctctcctatagcagttacatagaagtttagtagacagcaa 39701807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 39702903 - 39703037
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||| |||||     ||||||||| ||||    
T  39702903 ccaagtattcgagagcttggtctctccctaccgatcctttatcccaatccctgaatgcctttcttttcctttgcaacttat-----ttataatacaaact 39702997  T
Q  181 ccctcctatagcagttacatagaagtttaggtgacagcaa 220  Q
    | ||||||||||||||||||||||||||||  ||||||||    
T  39702998 ctctcctatagcagttacatagaagtttagtagacagcaa 39703037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 81 - 224
Target Start/End: Original strand, 41051013 - 41051151
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||  || ||||||||||||||||||||     ||||||||||||||    
T  41051013 ccaagaattcaagagcttggtctctccctacctatcctttatcccaatccctgaatatctgtcttttcctctgcatcttat-----ttataatactaact 41051107  T
Q  181 ccctcctatagcagttacatagaagtttaggtgacagcaactac 224  Q
    | |||||||| |||||||||||||||||||  || |||||||||    
T  41051108 ctctcctatatcagttacatagaagtttagtagatagcaactac 41051151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 19934684 - 19934599
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttata 166  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19934684 ccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctaaatgcctttcttttcctctgcatcttatttata 19934599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 29526123 - 29526254
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctacccttta-tcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaac 179  Q
    ||||||||||||||| |||||||||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||     ||||||||||||     
T  29526123 ccaagaattcgagagcttggtctctccctaccaatcctttaatcccaatccctgaatacctttcttttcctctgcatcttat-----ttataatactaa- 29526216  T
Q  180 tccctcctatagcagttacatagaagtttaggtgacagcaa 220  Q
        ||||||||| |||||||||||||||||  ||||||||    
T  29526217 ---gtcctatagctgttacatagaagtttagtagacagcaa 29526254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 29527337 - 29527420
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttattta 164  Q
    |||||||||| |||| |||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29527337 ccaagaattcaagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttattta 29527420  T

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Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 22950391 - 22950261
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||| |||||||||||||||||||     |||||||||||      
T  22950391 ccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttattttcctctgcatcttatt-----tataatactaa-- 22950299  T
Q  181 ccctcctatagcagttacatagaagtttaggtgacagcaa 220  Q
       ||||||||| |||||||||||||||||  ||||||||    
T  22950298 --gtcctatagctgttacatagaagtttagtagacagcaa 22950261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 39701583 - 39701655
Alignment:
Q  23 gaatgtgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    ||||||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  39701583 gaatgtgataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaaattcgagag 39701655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 95
Target Start/End: Complemental strand, 22950479 - 22950409
Alignment:
Q  25 atgtgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    ||||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  22950479 atgtgataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaaattcgagag 22950409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 19139484 - 19139417
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    ||||||||||||||||| ||| | |||||||||||||| ||||||||||||||||||| ||||||||||    
T  19139484 tgatagaaactgatatcaaaatt-taaactaatagtaagattacaatataatcccaagaaattcgagag 19139417  T

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Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 39702818 - 39702885
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  39702818 tgataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaaattcgagag 39702885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 19934769 - 19934711
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaagaa 87  Q
    |||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||||    
T  19934769 tgataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaa 19934711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 29526038 - 29526096
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaagaa 87  Q
    |||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||||    
T  29526038 tgataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaa 29526096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 29527251 - 29527318
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| ||| |||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  29527251 tgataggaacagatatcaaaa-tataaactaatagtaagattacaatataatcccaagaaattcgagag 29527318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 41050925 - 41050985
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaa-tattacaatataatcccaagaa 87  Q
    ||||||||||||||||| ||| |||||| | ||||||| ||| |||||| |||||||||||    
T  41050925 tgatagaaactgatatcaaaattataaatttatagtaattatcacaatagaatcccaagaa 41050985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 81 - 208
Target Start/End: Complemental strand, 7197844 - 7197722
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||| ||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||    
T  7197844 ccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttatt-----tataatactaact 7197750  T
Q  181 ccctcctatagcagttacatagaagttt 208  Q
    | ||||| ||||||||||||||||||||    
T  7197749 ctctcctgtagcagttacatagaagttt 7197722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 54994737 - 54994607
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||||||||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||     |||||||||||      
T  54994737 ccaagaattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatt-----tataatactaa-- 54994645  T
Q  181 ccctcctatagcagttacatagaagtttaggtgacagcaa 220  Q
       |||||||||||||||||||||||||||  ||||||||    
T  54994644 --gtcctatagcagttacatagaagtttagtagacagcaa 54994607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 592629 - 592505
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||||||||||||| |||| ||||||||||| | ||||||||||||||||||||| ||||||||||||| |||||||||||     |||||||||||||    
T  592629 ccaagaattcgagagcttgggctctccctaccaatcctttatcccaatccctgaatacctttcttttcctttgcatcttatt-----tataatactaact 592535  T
Q  181 ccctcctatagcagttacatagaagtttag 210  Q
    | |||||||||||||||||||  |||||||    
T  592534 cactcctatagcagttacatattagtttag 592505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 2386385 - 2386470
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttata 166  Q
    ||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2386385 ccaagaattcgagagcttggtctctccctacctatcctttatctcaatccctgaatgcctttcttttcctctgcatcttatttata 2386470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 45826237 - 45826322
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttata 166  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45826237 ccaagaattcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttata 45826322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 48637623 - 48637747
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||| ||| ||| ||||||||||||||||||||     ||||||||||||||    
T  48637623 ccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctcaatacctctcttttcctctgcatcttat-----ttataatactaact 48637717  T
Q  181 ccctcctatagcagttacatagaagtttag 210  Q
    | |||||||||||||||||||  |||||||    
T  48637718 cactcctatagcagttacatattagtttag 48637747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 51274514 - 51274436
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatctt 159  Q
    ||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  51274514 ccaagaatttgagagcttggtctctccctacctatcctttatcccaatccctgaatgcccttcttttcctctgcatctt 51274436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 116 - 224
Target Start/End: Complemental strand, 40976875 - 40976772
Alignment:
Q  116 cctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaactccctcctatagcagttacatagaagtttaggtgac 215  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||     | ||||| ||||||||||||||||||||| |||||||||  | |    
T  40976875 cctttatcccaatccctgcatgcctttcttttcctctgcatcttatttata-----agactaattccctcctatagcagttacattgaagtttagtagcc 40976781  T
Q  216 agcaactac 224  Q
    |||||||||    
T  40976780 agcaactac 40976772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 87
Target Start/End: Original strand, 45826149 - 45826210
Alignment:
Q  25 atgtgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaagaa 87  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  45826149 atgtgataggaactgatatcaaaa-tataaactaatagtaatattacaatataatcccaagaa 45826210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 7197931 - 7197862
Alignment:
Q  26 tgtgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  7197931 tgtgataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaaattcgagag 7197862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 40977002 - 40976947
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaa 84  Q
    |||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  40977002 tgataggaactgatatcaaaa-tataaactaatagtaatattacaatataatcccaa 40976947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 54994822 - 54994755
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  54994822 tgataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaaattcgagag 54994755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 48637538 - 48637596
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaagaa 87  Q
    |||||| |||||||||| ||| |||||||||||||||| |||||||||||||||||||||    
T  48637538 tgataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaa 48637596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 592707 - 592656
Alignment:
Q  35 aactgatatccaaagtataaactaatagtaatattacaatataatcccaagaa 87  Q
    |||||||||| ||| |||||||||||||||| |||||||||||||||||||||    
T  592707 aactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaa 592656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 2386289 - 2386331
Alignment:
Q  25 atgtgatagaaactgatatccaaagtataaactaatagtaatat 68  Q
    ||||||||||||||||||| |||| |||||||||||||||||||    
T  2386289 atgtgatagaaactgatat-caaaatataaactaatagtaatat 2386331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 95
Target Start/End: Complemental strand, 51274571 - 51274532
Alignment:
Q  57 taatagtaatattacaatataatcccaag-aattcgagag 95  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  51274571 taatagtaatattacaatataatcccaagaaattcgagag 51274532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 25184729 - 25184672
Alignment:
Q  143 cttttcctctgcatcttatttatattataatactaactccctcctatagcagttacatagaagtt 207  Q
    |||||||||||||||||   ||| ||||||||||||||||||   ||||||||||||||||||||    
T  25184729 cttttcctctgcatctt---tat-ttataatactaactccct---atagcagttacatagaagtt 25184672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 82; Significance: 7e-39; HSPs: 4)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 80845 - 80721
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||     |||||||||||||    
T  80845 ccaagaattcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttctttttctctgcatcttatt-----tataatactaact 80751  T
Q  181 ccctcctatagcagttacatagaagtttag 210  Q
    | |||||||||||||||||||  |||||||    
T  80750 cactcctatagcagttacatattagtttag 80721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 79649 - 79525
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||||||||||||| ||||||||||| |||||| ||||||||| ||||| ||||| ||||| |||||||||||||||||||     |||||||||||||    
T  79649 ccaagaattcgagagcttggtctctccgtacctatcctttatcctaatccatgaatacctttattttcctctgcatcttatt-----tataatactaact 79555  T
Q  181 ccctcctatagcagttacatagaagtttag 210  Q
    | |||||| ||||||||||||  |||||||    
T  79554 cactcctacagcagttacatattagtttag 79525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 79727 - 79667
Alignment:
Q  35 aactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  79727 aactgatatcaaaa-tataaactaatagtaatattacaatataatcccaagaaattcgagag 79667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 80930 - 80875
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaa 84  Q
    |||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  80930 tgataggaactgatatcaaaa-tataaactaatagtaatattacaatataatcccaa 80875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 81 - 210
Target Start/End: Original strand, 8788618 - 8788742
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    |||||||||||| || |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||     ||||||||||||||    
T  8788618 ccaagaattcgaaagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttat-----ttataatactaact 8788712  T
Q  181 ccctcctatagcagttacatagaagtttag 210  Q
    | |||||||||||||||||||  |||||||    
T  8788713 cactcctatagcagttacatattagtttag 8788742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 49122256 - 49122171
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttata 166  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49122256 ccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttata 49122171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 8089804 - 8089934
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||||||||||     ||||||||||||      
T  8089804 ccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttat-----ttataatactaa-- 8089896  T
Q  181 ccctcctatagcagttacatagaagtttaggtgacagcaa 220  Q
       ||||||||| |||||||||||||||||  ||||||||    
T  8089897 --gtcctatagctgttacatagaagtttagtagacagcaa 8089934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 10582828 - 10582698
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||||||||     |||||||||||      
T  10582828 ccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatt-----tataatactaa-- 10582736  T
Q  181 ccctcctatagcagttacatagaagtttaggtgacagcaa 220  Q
       ||||||||| |||||||||||||||||  ||||||||    
T  10582735 --gtcctatagctgttacatagaagtttagtagacagcaa 10582698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 10584034 - 10583904
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||||||||||||     ||||||| |    
T  10584034 ccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttata-----atactaagt 10583940  T
Q  181 ccctcctatagcagttacatagaagtttaggtgacagcaa 220  Q
    |||    ||||| |||||||||||||||||  ||||||||    
T  10583939 ccc----atagctgttacatagaagtttagtagacagcaa 10583904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 49122067 - 49121982
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttata 166  Q
    ||||| ||||||||| ||| |||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  49122067 ccaagtattcgagagcttgatctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttatttata 49121982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 92 - 207
Target Start/End: Original strand, 23541068 - 23541176
Alignment:
Q  92 agagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaactccctcctatag 191  Q
    |||| |||||||||||||||| | || ||||||||||||||||||| | |||||||||| ||||||||   ||| | ||||||||||||||||   ||||    
T  23541068 agagcttggtctctccctaccaatccattatcccaatccctgaatgtccttcttttcctttgcatctt---tat-tcataatactaactccct---atag 23541160  T
Q  192 cagttacatagaagtt 207  Q
    ||||||||||||||||    
T  23541161 cagttacatagaagtt 23541176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 101 - 220
Target Start/End: Complemental strand, 49123370 - 49123260
Alignment:
Q  101 tctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaactccctcctatagcagttacat 200  Q
    |||||||||||| | |||||| |||||||||||||| ||||||||||| |||||||||||||     |||||||||||     ||||||||| |||||||    
T  49123370 tctctccctaccaatcctttaccccaatccctgaatacctttcttttcttctgcatcttatt-----tataatactaa----gtcctatagctgttacat 49123280  T
Q  201 agaagtttaggtgacagcaa 220  Q
    ||||||||||  ||||||||    
T  49123279 agaagtttagtagacagcaa 49123260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 95
Target Start/End: Original strand, 8089715 - 8089786
Alignment:
Q  24 aatgtgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  8089715 aatgtgataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaaattcgagag 8089786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 8788533 - 8788591
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaagaa 87  Q
    |||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  8788533 tgataggaactgatatcaaaa-tataaactaatagtaatattacaatataatcccaagaa 8788591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 10582913 - 10582846
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| |||||||||| ||| |||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  10582913 tgataggaactgatatcaaaa-tataaactaatagtaagattacaatacaatcccaagaaattcgagag 10582846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 10584119 - 10584052
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| |||||||||| ||| |||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  10584119 tgataggaactgatatcaaaa-tataaactaatagtaagattacaatacaatcccaagaaattcgagag 10584052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 49122341 - 49122274
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| |||||||||  ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  49122341 tgataggaactgatatgaaaa-tataaactaatagtaagattacaatataatcccaagaaattcgagag 49122274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 49123475 - 49123408
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| |||||||||| ||| |||||||||||||||| |||| |||||||||||||| ||||||||||    
T  49123475 tgataggaactgatatcaaaa-tataaactaatagtaagattagaatataatcccaagaaattcgagag 49123408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 23540880 - 23540938
Alignment:
Q  30 atagaaactgatatccaaag-tataaactaatagtaatattacaatataatcccaagaa 87  Q
    |||| |||||||||| |||  |||||||||||||||| |||||| ||||||||||||||    
T  23540880 ataggaactgatatcaaaatatataaactaatagtaagattacagtataatcccaagaa 23540938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 88 - 220
Target Start/End: Complemental strand, 11197 - 11070
Alignment:
Q  88 ttcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaactccctcct 187  Q
    |||||||| |||||||||||||||| | |||||||||||||||||||||  |||||||||| |||||||||||||     |||||||||||||| |||||    
T  11197 ttcgagagcttggtctctccctaccaatcctttatcccaatccctgaatatctttcttttcttctgcatcttatt-----tataatactaactctctcct 11103  T
Q  188 atagcagttacatagaagtttaggtgacagcaa 220  Q
    |||||||||||||||||||||||  ||||||||    
T  11102 atagcagttacatagaagtttagtagacagcaa 11070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 12352 - 12267
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttata 166  Q
    |||||| ||| |||| |||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  12352 ccaagagttcaagagcttggtctctccctacctatcctttatcccaatccctgaataactttcttttcctctgcatcttatttata 12267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 11289 - 11222
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  11289 tgataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaaattcgagag 11222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 12438 - 12379
Alignment:
Q  27 gtgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaagaa 87  Q
    ||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  12438 gtgataggaacttatatcaaaa-tataaactaatagtaatattacaatataatcccaagaa 12379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 18133073 - 18133203
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||     ||||||||||||      
T  18133073 ccaagaattcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttat-----ttataatactaa-- 18133165  T
Q  181 ccctcctatagcagttacatagaagtttaggtgacagcaa 220  Q
       ||||||||| |||||||||||||||||  ||||||||    
T  18133166 --gtcctatagctgttacatagaagtttagtagacagcaa 18133203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 21535836 - 21535706
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||     |||||||||||      
T  21535836 ccaagaattcgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatt-----tataatactaa-- 21535744  T
Q  181 ccctcctatagcagttacatagaagtttaggtgacagcaa 220  Q
       ||||||||| |||||||||||||||||  ||||||||    
T  21535743 --ttcctatagctgttacatagaagtttagtagacagcaa 21535706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 21395676 - 21395761
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttata 166  Q
    ||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21395676 ccaagaattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatgcctttcttttcctctgcatcttatttata 21395761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 18131867 - 18131997
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||     ||||||||||||      
T  18131867 ccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcctctgcatcttat-----ttataatactaa-- 18131959  T
Q  181 ccctcctatagcagttacatagaagtttaggtgacagcaa 220  Q
       ||||||||| |||||||||||||||||  ||||||||    
T  18131960 --gtcctatagctgttacatagaagtttagtagacagcaa 18131997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 18132987 - 18133055
Alignment:
Q  27 gtgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    ||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  18132987 gtgataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaaattcgagag 18133055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 18131782 - 18131849
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  18131782 tgataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaaattcgagag 18131849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 21535921 - 21535854
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  21535921 tgataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaaattcgagag 21535854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 7033339 - 7033404
Alignment:
Q  30 atagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  7033339 ataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaaattcgagag 7033404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 7033443 - 7033484
Alignment:
Q  125 caatccctgaatgcctttcttttcctctgcatcttatttata 166  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  7033443 caatccctgaatacctttcttttcctctgcatcttatttata 7033484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 16189783 - 16189724
Alignment:
Q  25 atgtgatagaaactgatatccaaag-tataaactaatagtaatattacaatataatccca 83  Q
    |||||||||||||||||||| |||  |||||| ||||||||||||||||||| |||||||    
T  16189783 atgtgatagaaactgatatcaaaacatataaattaatagtaatattacaatagaatccca 16189724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 21395591 - 21395649
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaagaa 87  Q
    ||||||||||||||||| ||| |||||||||| ||||| |||| ||||||||||||||||    
T  21395591 tgatagaaactgatatcaaaa-tataaactaacagtaagattataatataatcccaagaa 21395649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 33790007 - 33789877
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||     |||||||||||      
T  33790007 ccaagaatttgagagcttggtctctccctacctatcctttatcccaatccctgaatacctttcttttcctctgcatcttatt-----tataatactaa-- 33789915  T
Q  181 ccctcctatagcagttacatagaagtttaggtgacagcaa 220  Q
       ||||||||| |||||||||||||||||  ||||||||    
T  33789914 --gtcctatagctgttacatagaagtttagtagacagcaa 33789877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 12324981 - 12324857
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    |||| |||||||||| |||||||||||||||| | |||||||| ||||||||||||  |||||||||||| |||||||||||     |||||||||||||    
T  12324981 ccaaaaattcgagagtttggtctctccctaccaatcctttatcgcaatccctgaatagctttcttttcctttgcatcttatt-----tataatactaact 12324887  T
Q  181 ccctcctatagcagttacatagaagtttag 210  Q
    | ||||||||| ||||||| | ||||||||    
T  12324886 ctctcctatagtagttacacataagtttag 12324857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 207
Target Start/End: Complemental strand, 18955495 - 18955376
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||||||| |||||||||||||||||||||| | ||||||||| |||  | |||| |  |||||||||||||||||   ||||| |||||| |||||||    
T  18955495 ccaagaattagagagattggtctctccctaccaatcctttatccaaataaccgaattctcttcttttcctctgcatc---tttat-ttataacactaact 18955400  T
Q  181 ccctcctatagcagttacatagaagtt 207  Q
    |   ||||||||||||||||| |||||    
T  18955399 c---cctatagcagttacataaaagtt 18955376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 6081329 - 6081199
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||||||||     |||||||||||      
T  6081329 ccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatt-----tataatactaa-- 6081237  T
Q  181 ccctcctatagcagttacatagaagtttaggtgacagcaa 220  Q
       ||||||||| |||||||||||||||||  ||||||||    
T  6081236 --gtcctatagctgttacatagaagtttagtagacagcaa 6081199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 6082536 - 6082451
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttata 166  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  6082536 ccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttata 6082451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 6081414 - 6081347
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| |||||||||| ||| |||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  6081414 tgataggaactgatatcaaaa-tataaactaatagtaagattacaatacaatcccaagaaattcgagag 6081347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 6082621 - 6082554
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| |||||||||| ||| |||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  6082621 tgataggaactgatatcaaaa-tataaactaatagtaagattacaatacaatcccaagaaattcgagag 6082554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 17901276 - 17901205
Alignment:
Q  26 tgtgatagaaactgatatccaaag-tataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    ||||||||||||||||||| |||  |||||| ||||||||||||||||||| | ||||||| ||||||||||    
T  17901276 tgtgatagaaactgatatcaaaacatataaattaatagtaatattacaatagattcccaagaaattcgagag 17901205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 27021472 - 27021417
Alignment:
Q  31 tagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaagaa 87  Q
    |||||||||||||| ||| ||| |  ||||||||||||||||||| |||||||||||    
T  27021472 tagaaactgatatcaaaa-tattacttaatagtaatattacaatagaatcccaagaa 27021417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 177948 - 178033
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttata 166  Q
    ||||| ||||||||| |||||||||||||||| | |||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  177948 ccaagtattcgagagcttggtctctccctaccaatcctttaccccaatccctgaatacctttcttttcctctgcatcttatttata 178033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 81 - 166
Target Start/End: Original strand, 211751 - 211836
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttata 166  Q
    ||||| ||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  211751 ccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatacctttcttttcttctgcatcttatttata 211836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 81 - 220
Target Start/End: Original strand, 205674 - 205804
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||| ||||||||| |||||||||||||||| | |||||||||||||||||||||  |||||||||| ||||||||||||     ||||||||||||      
T  205674 ccaagtattcgagagcttggtctctccctaccaatcctttatcccaatccctgaatatctttcttttcttctgcatcttat-----ttataatactaa-- 205766  T
Q  181 ccctcctatagcagttacatagaagtttaggtgacagcaa 220  Q
       ||||||||| |||||||||||||||||  ||||||||    
T  205767 --gtcctatagctgttacatagaagtttagtagacagcaa 205804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 205589 - 205656
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| |||||||||| ||| |||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  205589 tgataggaactgatatcaaaa-tataaactaatagtaagattacaatacaatcccaagaaattcgagag 205656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 211666 - 211733
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||| |||||||||| ||| |||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  211666 tgataggaactgatatcaaaa-tataaactaatagtaagattacaatacaatcccaagaaattcgagag 211733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 9e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 81 - 210
Target Start/End: Complemental strand, 40254531 - 40254412
Alignment:
Q  81 ccaagaattcgagagattggtctctccctacctaccctttatcccaatccctgaatgcctttcttttcctctgcatcttatttatattataatactaact 180  Q
    ||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||     ||||||||  ||||    
T  40254531 ccaagaatt-gagagcttggtctctccctaccaatcctttatcccaatccctgaat-cctttcttttcctctgcatcttat-----ttataatatgaact 40254439  T
Q  181 ccctcctatagcagttacatagaagtttag 210  Q
    |   ||||||||||||||||||||||||||    
T  40254438 c---cctatagcagttacatagaagtttag 40254412  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 95
Target Start/End: Original strand, 26246963 - 26247035
Alignment:
Q  23 gaatgtgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    ||||||||||| |||||||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||||||    
T  26246963 gaatgtgataggaactgatatcaaaa-tataaactaatagtaagattacaatataatcccaagaaattcgagag 26247035  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 2411059 - 2411119
Alignment:
Q  26 tgtgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaagaa 87  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||  |||||||||||    
T  2411059 tgtgatagaaactgatatcaaaa-tataaactaatagtaatattacaatcgaatcccaagaa 2411119  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 95
Target Start/End: Complemental strand, 40254616 - 40254549
Alignment:
Q  28 tgatagaaactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||||||| |||||| ||| |||||| ||||||||||||||||||| ||||||||| ||||||||||    
T  40254616 tgatagaaacagatatcaaaa-tataaattaatagtaatattacaatagaatcccaagaaattcgagag 40254549  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 95
Target Start/End: Complemental strand, 21661287 - 21661227
Alignment:
Q  35 aactgatatccaaagtataaactaatagtaatattacaatataatcccaag-aattcgagag 95  Q
    |||||||||| ||| |||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  21661287 aactgatatcaaaa-tataaactaatagtaagattacaatatattcccaagaaattcgagag 21661227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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