View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_11 (Length: 465)
Name: NF3039_low_11
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 34 - 281
Target Start/End: Complemental strand, 44250380 - 44250133
Alignment:
| Q |
34 |
cttataatttaagactattttttcttcaaaccgacttataatatgcaatggaggaaatgaatgaaaccaaattccaagatacatgaagggccaaataatg |
133 |
Q |
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| T |
44250380 |
cttataatttaagactattttttcttcaaaccgacttataatctgcaatggaggaaatgaatgaaaccaaattccaaaatacatgaagggccaaataatg |
44250281 |
T |
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| Q |
134 |
tggtaaatgagagtatgttaattcctcgtgctagtcaattgctatctttttgtcattcctatgtttgaaaaagaatggtaatagaatcagtaatgatatt |
233 |
Q |
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| T |
44250280 |
tagtaaatgagagtatgttaattcctcgtgctagtcaattgctatctttttgtcattcctatgtttgaaaaagaatggtaatagaatcagtaatgatatt |
44250181 |
T |
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| Q |
234 |
tttcttttcctaaaaaagaagcttttcaattaagacgttttgtctaaa |
281 |
Q |
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| T |
44250180 |
tttcttttcctaaaaaagaagcttttcaattaagacgttttgcctaaa |
44250133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 150 - 447
Target Start/End: Complemental strand, 44250094 - 44249798
Alignment:
| Q |
150 |
gttaattcctcgtgctagtcaattgctatctttttgtcattcctatgtttgaaaaagaatggtaatagaatcagtaatgatatttttcttttcctaaaaa |
249 |
Q |
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| T |
44250094 |
gttaattcctcatgccagccaattgctatctttttgtcattcatatgtttgaaaaagaacagtaatataatca-taatgaaatttttcttttcctaaaaa |
44249996 |
T |
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| Q |
250 |
agaagcttttcaattaagacgttttgtctaaaaaatacttagtagataattaatgtcaacacttgctgttaaaccaagggagaaaccaatattagaatga |
349 |
Q |
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| T |
44249995 |
agaagcttttcaattaagacgttttgcctaaaaaatacttattagataattaatgtcaacatttgctattaaaacaagggagaaaccaatcttagaatga |
44249896 |
T |
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| Q |
350 |
tcaccatttaaactagtgaggaacaaagccaaaaacgagaataagaaaacgctttgaataaagatgaccacaactacaaaaccattcaaagaaaaatt |
447 |
Q |
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| T |
44249895 |
tcaccatttaaactagtgaggaacaaagccaaaaacgagaataagaaaacgctttgaaaaaagatgaccacaactacaaaaccattcaaagaaaaatt |
44249798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 138 - 421
Target Start/End: Complemental strand, 44253692 - 44253422
Alignment:
| Q |
138 |
aaatgagagtatg-ttaattcctcgtgctagtcaattgctatctttttgtcattcctatgtttgaaaaagaatggtaatagaatcagtaatgatattttt |
236 |
Q |
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| T |
44253692 |
aaatgggagtatggttaattcctcgttccagccaattgctatcctcttgtctttcctatgtttgaaaaagaat------agaataagtaatg-tattttt |
44253600 |
T |
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| Q |
237 |
cttttcctaaaaaagaagcttttcaattaagacgttttgtctaaaaaatacttagtagataattaatgtcaacacttgctgttaaaccaagggag-aaac |
335 |
Q |
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| T |
44253599 |
ttcttcctaaaaaagaagcttttcaattaagacgttttgcctaaaaaata----gtaaataattaatgtcagcacg----gtaaaaccaagggaataaac |
44253508 |
T |
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| Q |
336 |
caatattagaatgatcaccatttaaactagtgaggaacaaagccaaaaacgagaataagaaaacgctttgaataaagatgaccaca |
421 |
Q |
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| T |
44253507 |
caatcttagaatgatcaccccttgaccaagtgaagaacaaagccaaaaacgagaataagaaaacgctttgaaaaaagatgatcaca |
44253422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 34 - 281
Target Start/End: Complemental strand, 50112544 - 50112307
Alignment:
| Q |
34 |
cttataatttaagactattttttcttcaaaccgacttataatatgcaatggaggaaatgaatgaaaccaaattccaagatacatgaagggccaaataatg |
133 |
Q |
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||||||||||||||| | |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50112544 |
cttataatttaagacaagtttttcttcaaaccgacttataatctacaatggaggaaatgaatgaaaccaaattccaagatacatgaagggccaaataata |
50112445 |
T |
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| Q |
134 |
tggtaaatgagagtatgttaattcctcgtgctagtcaattgctatctttttgtcattcctatgtttgaaaaagaatggtaatagaatcagtaatgatatt |
233 |
Q |
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| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||| | | |||||||||| |
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| T |
50112444 |
tagtaaatgagagtatgttaattcctcgtgccagccaattgctatccttttgtcattcctatgtttgaagaagaat----------ttattaatgatatt |
50112355 |
T |
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| Q |
234 |
tttcttttcctaaaaaagaagcttttcaattaagacgttttgtctaaa |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
50112354 |
tttcttttcctaaaaaagaagcttttcaattaagacgttttgcctaaa |
50112307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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