View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_12 (Length: 456)
Name: NF3039_low_12
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Complemental strand, 38580209 - 38579778
Alignment:
| Q |
19 |
ctggcttccttatttctcacgcttatgcaactatttacttcaatgtct-gtaatttataattgattgcagaacannnnnnnnnnnnnn-cattctatcct |
116 |
Q |
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| T |
38580209 |
ctggcttccttatttctcacgcttatgcaactatttacttcaatgtcttgtaatttataattgattgcagaacatttttttacttttttcattctatcct |
38580110 |
T |
|
| Q |
117 |
tctattgcaggtcaaggatcctatccatcaaattgtgaagcgtcagagatcacaggctccatgaacctgatttatggattgctcagtatttgtggatgac |
216 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38580109 |
tctattgcaggtcaaggatcctatccatcaaagtgtgaagcgtcagagatcacaggctccatgaacctgatttatggattgctcagtatttgtggatgac |
38580010 |
T |
|
| Q |
217 |
acaaacaaaaactgatacgcatctcaaacttatataccatacaattaagcatttagtaatgcatacagtcatagagacaatgctttgtaagaaaaatctt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38580009 |
acaaacaaaaactgatacgcatctcaaacttatataccatacaattaagcatttagtaatgcatacagtcatagagacaatgctttgtaagaaaaatctt |
38579910 |
T |
|
| Q |
317 |
tagttgctttcttgtccgacttctttgttactggcttacgccaagtattgctattttactt-caaggatttttatatttaaaaattttagttcataaaac |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38579909 |
tagttgctttcttgtccgacttctttgttactggcttacgccaagtattgctattttacttccaaggatttttatatttaaaaattttagttcataaaac |
38579810 |
T |
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| Q |
416 |
tgctcccagcgccttatcgtccagcttcttct |
447 |
Q |
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||||| |||||||||||||||||||||||||| |
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| T |
38579809 |
tgctctcagcgccttatcgtccagcttcttct |
38579778 |
T |
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