View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3039_low_14 (Length: 422)

Name: NF3039_low_14
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3039_low_14
NF3039_low_14
[»] chr3 (17 HSPs)
chr3 (115-416)||(925583-925884)
chr3 (115-416)||(44702968-44703269)
chr3 (115-281)||(24758985-24759151)
chr3 (115-281)||(24826863-24827029)
chr3 (116-250)||(33648375-33648509)
chr3 (115-281)||(37984709-37984875)
chr3 (115-281)||(53024890-53025056)
chr3 (159-267)||(13364198-13364306)
chr3 (157-241)||(21037162-21037246)
chr3 (159-310)||(46921626-46921775)
chr3 (115-286)||(18986333-18986504)
chr3 (115-281)||(17689293-17689459)
chr3 (115-281)||(31687494-31687660)
chr3 (141-250)||(20370786-20370895)
chr3 (141-205)||(46590842-46590906)
chr3 (157-241)||(46832494-46832578)
chr3 (162-250)||(36155457-36155545)
[»] chr5 (6 HSPs)
chr5 (115-416)||(43026461-43026762)
chr5 (115-281)||(30442893-30443059)
chr5 (159-281)||(22003049-22003171)
chr5 (141-247)||(37714174-37714280)
chr5 (159-226)||(7472560-7472627)
chr5 (161-222)||(9463572-9463633)
[»] chr4 (4 HSPs)
chr4 (115-416)||(5454071-5454372)
chr4 (14-102)||(5453283-5453371)
chr4 (163-267)||(30176365-30176469)
chr4 (126-187)||(27707845-27707906)
[»] scaffold0007 (1 HSPs)
scaffold0007 (159-311)||(79276-79428)
[»] chr7 (12 HSPs)
chr7 (115-281)||(14231836-14232002)
chr7 (123-245)||(11002996-11003118)
chr7 (115-281)||(26906764-26906930)
chr7 (157-248)||(44117826-44117917)
chr7 (115-281)||(1264560-1264726)
chr7 (172-270)||(21314400-21314498)
chr7 (116-281)||(48847212-48847377)
chr7 (126-250)||(34577192-34577316)
chr7 (151-250)||(22368168-22368267)
chr7 (115-193)||(30068107-30068185)
chr7 (172-250)||(40674471-40674549)
chr7 (115-193)||(45137779-45137857)
[»] chr6 (10 HSPs)
chr6 (115-223)||(22390029-22390137)
chr6 (115-223)||(30775426-30775534)
chr6 (192-282)||(26533381-26533471)
chr6 (179-301)||(9853274-9853395)
chr6 (115-281)||(31891479-31891645)
chr6 (159-310)||(32263099-32263251)
chr6 (141-247)||(4439956-4440062)
chr6 (126-187)||(2736627-2736688)
chr6 (141-205)||(4095981-4096045)
chr6 (116-227)||(21999415-21999526)
[»] chr1 (3 HSPs)
chr1 (115-281)||(25226606-25226773)
chr1 (162-250)||(47742018-47742106)
chr1 (162-211)||(38685384-38685433)
[»] chr8 (5 HSPs)
chr8 (115-301)||(18850850-18851031)
chr8 (159-310)||(35615191-35615341)
chr8 (117-299)||(43382483-43382665)
chr8 (159-250)||(16804720-16804811)
chr8 (159-280)||(31378870-31378991)
[»] chr2 (1 HSPs)
chr2 (159-226)||(12742644-12742711)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 115 - 416
Target Start/End: Original strand, 925583 - 925884
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  925583 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcaatcactcaaacaggttggcat 925682  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 314  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  925683 ttaccttccacaaccagtattctatcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgaaaac 925782  T
Q  315 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcatctc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  925783 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcatttc 925882  T
Q  415 ag 416  Q
    ||    
T  925883 ag 925884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 115 - 416
Target Start/End: Complemental strand, 44703269 - 44702968
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    ||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  44703269 gaattccttttaaatttcaacgtcgacaattccctatatctgtttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttgacat 44703170  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||  ||    
T  44703169 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaatggctgaatattttgctgttggatgaacac 44703070  T
Q  315 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcatctc 414  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||| |||||| |||||| ||    
T  44703069 ggttgctgcattgataataccaataatgttgttttcaaggagatttttcgtaacggttagttaatttcactctgtttatttatttgttctatttcatttc 44702970  T
Q  415 ag 416  Q
    ||    
T  44702969 ag 44702968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 115 - 281
Target Start/End: Complemental strand, 24759151 - 24758985
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    |||||||||| |||||||||||| | ||||| | ||||||| | |||||||||||||| || |||||||||||| | || ||||| || || |||| |||    
T  24759151 gaattcctttcaaatttcaacgtaggcagtttcttatatctttgtgttttgcaatgactataaacaaaagtcagtgacaatcacttaagcaagttgacat 24759052  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 281  Q
     || ||||||||| | || ||||| ||||| ||||| || || || |||||| | ||||||||||||    
T  24759051 ctatcttccacaatcggtcttctcacatggacaactatatgttgcaatatcacgtgttacatcaagg 24758985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 115 - 281
Target Start/End: Original strand, 24826863 - 24827029
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    |||||||||| |||||||||||| | ||||| | ||||||| | |||||||||||||| || |||||||||||| | || ||||| || || |||| |||    
T  24826863 gaattcctttcaaatttcaacgtaggcagtttcttatatctttgtgttttgcaatgactataaacaaaagtcagtgacaatcacttaagcaagttgacat 24826962  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 281  Q
     || ||||||||| | || ||||| ||||| ||||| || || || |||||| | ||||||||||||    
T  24826963 ctatcttccacaatcggtcttctcacatggacaactatatgttgcaatatcacgtgttacatcaagg 24827029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 33648509 - 33648375
Alignment:
Q  116 aattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatt 215  Q
    ||||||||| |||||||||||| ||||||| ||||||||| | |||||||||||||| || |||||||||||| | || ||||| || || |||| |||     
T  33648509 aattcctttcaaatttcaacgtagtcagtttcctatatctttgtgttttgcaatgactataaacaaaagtcagtgacaatcacttaagcaagttgacatc 33648410  T
Q  216 taccttccacaaccagtattctctcatggtcaact 250  Q
    || ||||||||| | || ||||| ||||| |||||    
T  33648409 tatcttccacaatcggtcttctcacatggacaact 33648375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 281
Target Start/End: Original strand, 37984709 - 37984875
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    |||||||||| |||||||||||  | ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| || || ||||||||    
T  37984709 gaattcctttcaaatttcaacgcagacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcat 37984808  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 281  Q
     || ||||||||| | ||  |||| ||||| || || || || || |||||| | ||||||||||||    
T  37984809 ctatcttccacaatcggtcgtctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 37984875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 281
Target Start/End: Complemental strand, 53025056 - 53024890
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    |||||||||| |||||||||||  | || || ||||||||| | |||||| ||||||| || |||||||||||||| || ||||| || || |||| |||    
T  53025056 gaattcctttcaaatttcaacgcagacaatttcctatatctttgtgttttacaatgactataaacaaaagtcagggacaatcacttaagcaagttgacat 53024957  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 281  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  53024956 ctatcttccacaatcggtcttctcacatggacagctatatgttgcaatatcacgtgttacatcaagg 53024890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 267
Target Start/End: Complemental strand, 13364306 - 13364198
Alignment:
Q  159 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 258  Q
    |||||||||||||  || ||||||||||| ||||||||||| ||||| |||| ||| || |||||| |  || | ||||| |||||||||||||| ||||    
T  13364306 tgttttgcaatgattattaacaaaagtcaagggcagtcactaaaacaagttgacatatatcttccaaaggcaattttctcgcatggtcaactctatgtag 13364207  T
Q  259 ccatatcaa 267  Q
    | |||||||    
T  13364206 caatatcaa 13364198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 21037246 - 21037162
Alignment:
Q  157 tttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctca 241  Q
    ||||||||||||||||||| ||||||| |||||| || ||| | ||||| |||||||| ||||| |||||| | |||||||||||    
T  21037246 tttgttttgcaatgaccattaacaaaactcagggtcaatcattaaaacaagttggcatctacctaccacaatctgtattctctca 21037162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 159 - 310
Target Start/End: Complemental strand, 46921775 - 46921626
Alignment:
Q  159 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 258  Q
    ||||||||||||||||||||| ||||| | ||||||||||| || ||| |||| || ||||||| |||    || ||||   |||||||||| || ||||    
T  46921775 tgttttgcaatgaccatcaactaaagttaagggcagtcactaaatcagattggtatataccttctaca--ttgtgttcttaaatggtcaactttatgtag 46921678  T
Q  259 ccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatga 310  Q
    | |||||||||||| | ||||| || ||  ||||||||||||| ||||||||    
T  46921677 caatatcaagggttgcctcaagaaatggtttgaaaattttgctattagatga 46921626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 286
Target Start/End: Complemental strand, 18986504 - 18986333
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    ||||||| ||||| ||||| ||||| ||||||||||||||  |||  ||||||||||| |||||||||||||| ||||| ||| | ||| | |||||  |    
T  18986504 gaattccatttaagtttcagcgtcgacagttccctatatcggtttcatttgcaatgacgatcaacaaaagtcaagggcaatcattgaaagaagttggagt 18986405  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagg 286  Q
     |||||||| ||||| || || || || || ||||| || || ||  | ||||| ||||||||||| |||||    
T  18986404 ataccttcctcaaccggttttttcccacggacaactatatgttgcggtgtcaagagttacatcaagaaaagg 18986333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 281
Target Start/End: Original strand, 17689293 - 17689459
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    |||||| ||| |||||||||||  | |||||  ||||| || | ||||||||||||||||| |||||||||||||| || ||||| || || ||||| ||    
T  17689293 gaattcgtttcaaatttcaacgcagacagtttactatagctttgtgttttgcaatgaccataaacaaaagtcagggacaatcacttaagcaagttgggat 17689392  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 281  Q
     || ||||||||| | || ||||| ||||| || || || || || ||||||   ||||||||||||    
T  17689393 ctatcttccacaatcggtcttctcacatgggcagctatatgttgcaatatcacatgttacatcaagg 17689459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 281
Target Start/End: Original strand, 31687494 - 31687660
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    |||||||||| |||||||||||  | |||||  ||||| || | ||||||||||| || || |||||||||||||| |  ||||| || || |||| |||    
T  31687494 gaattcctttcaaatttcaacgcagacagttttctatagctttgtgttttgcaatcactataaacaaaagtcagggacgatcacttaagcaagttgacat 31687593  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 281  Q
     || ||||||||| |||| ||||| ||||| || || || || || |||||| | ||||||||||||    
T  31687594 ctatcttccacaatcagtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 31687660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 20370895 - 20370786
Alignment:
Q  141 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctc 240  Q
    ||||| ||||||||| |||||||||||||||| |||||||| ||||| || || ||| | ||| | ||||   | |||||||| ||||| || |||||||    
T  20370895 cagtttcctatatctgtttgttttgcaatgacaatcaacaagagtcaaggacaatcattgaaagaagttgctgtctaccttcctcaacccgtgttctctc 20370796  T
Q  241 atggtcaact 250  Q
    ||||||||||    
T  20370795 atggtcaact 20370786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 46590906 - 46590842
Alignment:
Q  141 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaaca 205  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || |||||||||||    
T  46590906 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaaca 46590842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 46832578 - 46832494
Alignment:
Q  157 tttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctca 241  Q
    |||||||||| |||||||| |||||| ||||  | || ||||| |||||||||||||| ||||| |||||| || | ||||||||    
T  46832578 tttgttttgctatgaccattaacaaacgtcaatgtcaatcactaaaacaggttggcatctacctaccacaatcaatcttctctca 46832494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 36155457 - 36155545
Alignment:
Q  162 tttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 250  Q
    ||||||||||| || ||||||||||| || ||||| ||||| || |||||  | || || ||||||||  | |||||||||||||||||    
T  36155457 tttgcaatgactattaacaaaagtcaaggtcagtctctcaagcaagttggtgtatatctcccacaacctatgttctctcatggtcaact 36155545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 115 - 416
Target Start/End: Complemental strand, 43026762 - 43026461
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    ||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  43026762 gaattccttttaaatttcaacgtcgacagttccctatatttgtttgttttgcaatgaacattaacaaaagtcaggggcagtcactcaagcaggttggcat 43026663  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 314  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  43026662 ttacattctacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgaacac 43026563  T
Q  315 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcatctc 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||| |||||||| ||    
T  43026562 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaacgtttagttaatttcactctgtttatttatctgttatgtttcatttc 43026463  T
Q  415 ag 416  Q
    ||    
T  43026462 ag 43026461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 281
Target Start/End: Complemental strand, 30443059 - 30442893
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    |||||||||| |||||||||||    ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| ||  | ||||||||    
T  30443059 gaattcctttcaaatttcaacgcatacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagtaagttggcat 30442960  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 281  Q
     || ||||||||||| || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  30442959 ctatcttccacaaccggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 30442893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 281
Target Start/End: Complemental strand, 22003171 - 22003049
Alignment:
Q  159 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 258  Q
    |||||||||||||| || ||||||||||| || || ||||| || || |||||||| || ||||||||| | || ||||| ||||| || || || || |    
T  22003171 tgttttgcaatgactataaacaaaagtcaaggacaatcacttaagcaagttggcatctatcttccacaatcggtcttctcacatggacagctatatgttg 22003072  T
Q  259 ccatatcaagggttacatcaagg 281  Q
    | |||||| | ||||||||||||    
T  22003071 caatatcacgcgttacatcaagg 22003049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 37714280 - 37714174
Alignment:
Q  141 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctc 240  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || ||||||||||| || |   | || | ||| ||||| ||||||||||    
T  37714280 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcatggacaatcactcaaacaagtggttgtgtatcgtcctcaacccgtattctctc 37714181  T
Q  241 atggtca 247  Q
    |||||||    
T  37714180 atggtca 37714174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 226
Target Start/End: Complemental strand, 7472627 - 7472560
Alignment:
Q  159 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccaca 226  Q
    |||||||||||||| || |||||||||||||| || ||||| || || |||||||| || ||||||||    
T  7472627 tgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcatctatcttccaca 7472560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 9463572 - 9463633
Alignment:
Q  161 ttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttc 222  Q
    ||||||||||||||| ||||||||||| | ||||||||| ||| | |||| ||| |||||||    
T  9463572 ttttgcaatgaccattaacaaaagtcaagtgcagtcactaaaagaagttgacatataccttc 9463633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 115 - 416
Target Start/End: Original strand, 5454071 - 5454372
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    |||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5454071 gaattccttttaaatttcaacgccgacagttccctatatctgtttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 5454170  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgataac 314  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||| |||||  ||    
T  5454171 ttaccttccacaaccagtattctctcatggtcaactctatgtagccatatcaagggttacatcaaggaaaggacttaaaattttgttgttggatgaacac 5454270  T
Q  315 ggttgctgcattgatagtaccaataatgttgttttcaaggagatttttcgtaatgtttagttgatttcactttgtttatttatctgttctgtttcatctc 414  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| ||    
T  5454271 ggttgctgcattgatagtaccaataatgttgttttcaacgagatttttcgtaacgtttagttaatttcactctgtttatttatctgttctgtttcatttc 5454370  T
Q  415 ag 416  Q
    ||    
T  5454371 ag 5454372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 5453283 - 5453371
Alignment:
Q  14 cacatgttatagctttacatttctttggttctattgtataactttgtcagcgttcttcttaaacagaatgggaagattcaggcatctgc 102  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||  |||||||||| || ||||||||||||||||||||    
T  5453283 cacatgttatagctttacatttatttggttcaattgtataactttgtcagcgtgtttcttaaacaaaaagggaagattcaggcatctgc 5453371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 267
Target Start/End: Complemental strand, 30176469 - 30176365
Alignment:
Q  163 ttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccat 262  Q
    |||||||||| || |||||||||||  | || ||||||||||| |||||||| || ||| ||||| |||| ||||| ||||||||||| || || || ||    
T  30176469 ttgcaatgactattaacaaaagtcaaagacaatcactcaaacaagttggcatatatctttcacaatcagtgttctcgcatggtcaactgtatgttgcgat 30176370  T
Q  263 atcaa 267  Q
    |||||    
T  30176369 atcaa 30176365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 27707906 - 27707845
Alignment:
Q  126 aaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtca 187  Q
    ||||| |||||| | ||||| |||||||||| ||||||||||||||| ||||| || |||||    
T  27707906 aaattccaacgtaggcagtttcctatatctacttgttttgcaatgacaatcaataagagtca 27707845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 159 - 311
Target Start/End: Complemental strand, 79428 - 79276
Alignment:
Q  159 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 258  Q
    |||||||||||||| || ||||||||||| ||||||||||||||||| |||| ||| || |||||||||||||| ||||  ||||||||||| || ||||    
T  79428 tgttttgcaatgactatgaacaaaagtcaagggcagtcactcaaacaagttgacatatatcttccacaaccagtgttcttgcatggtcaactttatgtag 79329  T
Q  259 ccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatgat 311  Q
    | |||||| | ||||| |||||||| || |||||||||| |||  ||||||||    
T  79328 caatatcaggagttacttcaaggaatggtctgaaaatttcgctaatagatgat 79276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 281
Target Start/End: Original strand, 14231836 - 14232002
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    |||||||||| |||||||||||  | ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| || || ||||||||    
T  14231836 gaattcctttcaaatttcaacgcagacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcat 14231935  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 281  Q
     || ||||||||||| || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  14231936 ctatcttccacaaccggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 14232002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 123 - 245
Target Start/End: Complemental strand, 11003118 - 11002996
Alignment:
Q  123 tttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttc 222  Q
    ||||||||||||||| | ||||| ||| ||||  | |||||||||||||| |||||||| ||||| || || |||||||||||  ||||  | |||||||    
T  11003118 tttaaatttcaacgtaggcagtttcctctatcagtatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaacaaattggtgtgtaccttc 11003019  T
Q  223 cacaaccagtattctctcatggt 245  Q
    | ||||| |||||||||||||||    
T  11003018 ctcaacccgtattctctcatggt 11002996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 115 - 281
Target Start/End: Complemental strand, 26906930 - 26906764
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    |||||||||| |||||||||||  | ||||| |||||| || | |||||||||||||| || || ||||||||||| || ||||| || || ||| ||||    
T  26906930 gaattcctttcaaatttcaacgcagacagtttcctatagctttgtgttttgcaatgactataaataaaagtcagggacaatcacttaagcaagttagcat 26906831  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 281  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  26906830 ctatcttccacaatcggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 26906764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 248
Target Start/End: Original strand, 44117826 - 44117917
Alignment:
Q  157 tttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaa 248  Q
    ||||||||||||||||||| |||||||| || ||||| ||| | ||| | |||||||| ||||| |||||| | |||||||| || ||||||    
T  44117826 tttgttttgcaatgaccattaacaaaagccaagggcaatcattaaaataagttggcatctacctaccacaatctgtattctcccacggtcaa 44117917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 281
Target Start/End: Original strand, 1264560 - 1264726
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    |||||||||| |||||||||||     |||| |||||| || | || ||||||||||| || |||||||||||||| || ||||| || || |||||| |    
T  1264560 gaattcctttcaaatttcaacgcaaatagtttcctatagctttgtgctttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggctt 1264659  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 281  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  1264660 ctatcttccacaatcggtcttctcacatggacagctatatgttgcaatatcatgtgttacatcaagg 1264726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 21314498 - 21314400
Alignment:
Q  172 ccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaaggg 270  Q
    |||| |||||||||||   |||||||||  |||| ||||| || ||||||||||| ||| | ||||| ||||||||||| || ||||| ||||||||||    
T  21314498 ccattaacaaaagtcaaacgcagtcactacaacaagttggtatataccttccacagccaatgttctcacatggtcaactttatgtagcaatatcaaggg 21314400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 281
Target Start/End: Complemental strand, 48847377 - 48847212
Alignment:
Q  116 aattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatt 215  Q
    ||||||||| |||||||||||     |||| |||||| || | || ||||||||||| || |||||||||||||| || ||||| || || |||||| |     
T  48847377 aattcctttcaaatttcaacgcaaatagtttcctatagctttgtgctttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcttc 48847278  T
Q  216 taccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 281  Q
    || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  48847277 tatcttccacaatcggtcttctcacatggacagctatatgttgcaatatcatgtgttacatcaagg 48847212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 250
Target Start/End: Original strand, 34577192 - 34577316
Alignment:
Q  126 aaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccac 225  Q
    ||||| |||||| | ||||| ||||||||| ||| |||||||||||| |||||||| ||||| || || ||| | ||| | ||||   | |||||||| |    
T  34577192 aaattccaacgtaggcagtttcctatatctgtttattttgcaatgacaatcaacaagagtcaaggacaatcattaaaagaagttgatgtctaccttcctc 34577291  T
Q  226 aaccagtattctctcatggtcaact 250  Q
    |||  || |||||||||||||||||    
T  34577292 aactcgtgttctctcatggtcaact 34577316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 151 - 250
Target Start/End: Original strand, 22368168 - 22368267
Alignment:
Q  151 tatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 250  Q
    ||||||| |||||||||||||| |||||||| ||||| || || ||||||||||| || |   | || | ||| ||||| ||||||||||||||| ||||    
T  22368168 tatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaacaagtggttgtgtatcgtcctcaacccgtattctctcatggtaaact 22368267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 30068107 - 30068185
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggca 193  Q
    ||||||| || || ||||| ||||| ||||||||||||||  | |  ||||||||||| |||||||||||||| |||||    
T  30068107 gaattccattcaagtttcagcgtcgacagttccctatatcggtgtcatttgcaatgacgatcaacaaaagtcaagggca 30068185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 250
Target Start/End: Complemental strand, 40674549 - 40674471
Alignment:
Q  172 ccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 250  Q
    |||| |||||||||||   |||||||||  |||| ||||| || ||||||||||||||| | ||||| |||||||||||    
T  40674549 ccattaacaaaagtcaaacgcagtcactacaacaagttggtatataccttccacaaccaatgttctcacatggtcaact 40674471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 45137779 - 45137857
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggca 193  Q
    ||||||| || || ||||| ||||| ||||||||||||||  | |  ||||||||||| |||||||||||||| |||||    
T  45137779 gaattccattcaagtttcagcgtcgacagttccctatatcggtgtcatttgcaatgacgatcaacaaaagtcaagggca 45137857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 223
Target Start/End: Complemental strand, 22390137 - 22390029
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    ||||| ||||||||||||||||||| |||||| |||||| | | | |||||| |||||||| || |||||||| || |||||||| ||| | ||||||||    
T  22390137 gaatttcttttaaatttcaacgtcgacagttcgctatatttgtatcttttgcgatgaccattaataaaagtcaaggacagtcactaaaataagttggcat 22390038  T
Q  215 ttaccttcc 223  Q
     ||||||||    
T  22390037 ataccttcc 22390029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 30775426 - 30775534
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    |||||||||||||||| |||||  |  |||| ||||||  | ||||||||||||||| ||||||||||| ||| |||||||||||||| || ||||||||    
T  30775426 gaattccttttaaattccaacgctgagagtttcctatagatgtttgttttgcaatgatcatcaacaaaaatcaagggcagtcactcaagcaagttggcat 30775525  T
Q  215 ttaccttcc 223  Q
     || |||||    
T  30775526 atatcttcc 30775534  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 192 - 282
Target Start/End: Original strand, 26533381 - 26533471
Alignment:
Q  192 cagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagga 282  Q
    |||||||||||||| |||||  | ||||||| |||||| |||||||||||||||||||  || || || ||||||||||||| ||||||||    
T  26533381 cagtcactcaaacaagttggtgtataccttctacaacccgtattctctcatggtcaacattatgttgcaatatcaagggttatatcaagga 26533471  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 179 - 301
Target Start/End: Original strand, 9853274 - 9853395
Alignment:
Q  179 caaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatca 278  Q
    ||||||||| || |||||||||||| | |||||||| || ||||||||||| || ||||| ||||  ||||| || ||||| ||||| || ||||| |||    
T  9853274 caaaagtcaaggacagtcactcaaataagttggcatatatcttccacaacc-gtgttctcgcatgaacaactttatgtagcaatatcgagagttacttca 9853372  T
Q  279 aggaaagggctgaaaattttgct 301  Q
    ||| | || ||||||||||||||    
T  9853373 agggatggcctgaaaattttgct 9853395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 281
Target Start/End: Complemental strand, 31891645 - 31891479
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    |||||||||| |||||||| ||    ||||| |||||| || | |||||||||||||| || |||||||||||||| || ||||| || || | ||||||    
T  31891645 gaattcctttcaaatttcaccgcatacagtttcctatagctttgtgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaaggtggcat 31891546  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 281  Q
     || ||||||||| | || ||||| ||||| || || || || || |||||| | ||||||||||||    
T  31891545 ctatcttccacaatcggtcttctcacatgggcagctatatgttgcaatatcacgtgttacatcaagg 31891479  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 310
Target Start/End: Original strand, 32263099 - 32263251
Alignment:
Q  159 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctct-catggtcaactctacgta 257  Q
    ||||||| |||||| || ||||||| ||| |||||||||| |||||| || ||||| || || ||||||||||| || | | ||| ||||||| || |||    
T  32263099 tgttttgtaatgactattaacaaaaatcaagggcagtcacgcaaacaagtaggcatatatctcccacaaccagttttttttgcattgtcaactttatgta 32263198  T
Q  258 gccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatga 310  Q
    || |||||||| ||||| |||| ||  ||  |||||||||||||  |||||||    
T  32263199 gcaatatcaagagttacttcaatgagtggtttgaaaattttgctaatagatga 32263251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 247
Target Start/End: Original strand, 4439956 - 4440062
Alignment:
Q  141 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctc 240  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || ||||||||||| || |   | || | ||| ||||| ||||||||||    
T  4439956 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaacaagtggttgtgtatcgtcctcaacccgtattctctc 4440055  T
Q  241 atggtca 247  Q
    |||||||    
T  4440056 atggtca 4440062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 2736627 - 2736688
Alignment:
Q  126 aaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtca 187  Q
    ||||| |||||| | ||||| ||||||||| |||||||||||||||| |||||||| |||||    
T  2736627 aaattccaacgtaggcagtttcctatatctgtttgttttgcaatgacaatcaacaagagtca 2736688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 4095981 - 4096045
Alignment:
Q  141 cagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaaca 205  Q
    ||||| ||| ||||||| |||||||||||||| |||||||| ||||| || || |||||||||||    
T  4095981 cagtttcctctatctatatgttttgcaatgacaatcaacaagagtcaaggacaatcactcaaaca 4096045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 21999526 - 21999415
Alignment:
Q  116 aattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatt 215  Q
    ||||||||| |||||||||||  | || || |||||| || | |||||| ||||||| || |||||||||||||| || ||||| || || ||| ||||     
T  21999526 aattcctttcaaatttcaacgcagacaatttcctatagctttgtgttttacaatgactataaacaaaagtcagggacaatcacttaagcaagttagcatc 21999427  T
Q  216 taccttccacaa 227  Q
    || |||||||||    
T  21999426 tatcttccacaa 21999415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 115 - 281
Target Start/End: Original strand, 25226606 - 25226773
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccat-caacaaaagtcaggggcagtcactcaaacaggttggca 213  Q
    |||||||||| |||||||||||| | ||||| |||||| || | |||||||||||||| ||  || ||||||||||| || ||||| || || |||||||    
T  25226606 gaattcctttcaaatttcaacgtagacagtttcctatagctttgtgttttgcaatgactataaaaaaaaagtcagggacaatcacttaagcaagttggca 25226705  T
Q  214 tttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaagg 281  Q
    | || ||||||||||| || ||||| ||||| ||  | || || || |||||| | ||||||||||||    
T  25226706 tctatcttccacaaccggtcttctcacatgggcagttatatgttgcaatatcacgtgttacatcaagg 25226773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 47742018 - 47742106
Alignment:
Q  162 tttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 250  Q
    ||||||||||| || ||||||||||| || || || |||||||| |||||  | || ||  ||||||| ||||||||||||||||||||    
T  47742018 tttgcaatgactattaacaaaagtcaaggccaatctctcaaacaagttggagtatatctctcacaacctgtattctctcatggtcaact 47742106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 38685384 - 38685433
Alignment:
Q  162 tttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttgg 211  Q
    ||||||||||| |||||||||||||| |||||||| || ||||| |||||    
T  38685384 tttgcaatgacaatcaacaaaagtcaagggcagtcgcttaaacatgttgg 38685433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 301
Target Start/End: Complemental strand, 18851031 - 18850850
Alignment:
Q  115 gaattccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcat 214  Q
    ||||| |||||||||| ||| || | ||||| | ||||||| |  |||||||||||||||| ||||||||||| | | ||||||| ||||| ||||| ||    
T  18851031 gaatttcttttaaatt-caatgtagacagtttcatatatctgtgagttttgcaatgaccattaacaaaagtcaagcgtagtcactaaaacaagttggtat 18850933  T
Q  215 ttaccttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttgct 301  Q
     ||||    ||||||||| || || ||||||||||| || ||||| |||||||||| ||| | ||| || || ||||||| ||||||    
T  18850932 atacc----acaaccagtgttgtcacatggtcaactttatgtagcaatatcaagggctacctaaagaaacggtctgaaaactttgct 18850850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 310
Target Start/End: Original strand, 35615191 - 35615341
Alignment:
Q  159 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 258  Q
    ||||||| |||||| || ||||||||||| || ||||||| |||||| || ||||| || || ||||||||||| || |  ||||||||||| || ||||    
T  35615191 tgttttgtaatgactattaacaaaagtcaaggacagtcacgcaaacaagtaggcatatatctcccacaaccagtttttttgcatggtcaactttatgtag 35615290  T
Q  259 ccatatcaagggttacatcaaggaaagggctgaaaattttgctgttagatga 310  Q
    | |||| ||| ||||| |||||||| || ||  ||||||||||  |||||||    
T  35615291 caatat-aagagttacttcaaggaatggtctagaaattttgctaatagatga 35615341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 117 - 299
Target Start/End: Original strand, 43382483 - 43382665
Alignment:
Q  117 attccttttaaatttcaacgtcgtcagttccctatatctatttgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcattt 216  Q
    ||||| |||||||| |||||||| ||||| ||| ||||  | |||||| | ||||| |||||||| ||||| || || ||||||||| | |||||  | |    
T  43382483 attccgtttaaattccaacgtcggcagtttcctctatcagtctgtttttctatgacaatcaacaagagtcaaggacaatcactcaaaaaagttggtgtgt 43382582  T
Q  217 accttccacaaccagtattctctcatggtcaactctacgtagccatatcaagggttacatcaaggaaagggctgaaaattttg 299  Q
    || | || ||||| ||||||||||| |||||| | || || || ||||| || |||||||||||||  || ||||| ||||||    
T  43382583 acgtacctcaacccgtattctctcacggtcaagtttatgttgcaatatccagagttacatcaaggagtggtctgaagattttg 43382665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 250
Target Start/End: Original strand, 16804720 - 16804811
Alignment:
Q  159 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaact 250  Q
    |||||||||||||| || ||||||||||| || || || |||||||| |||||  | || ||  ||||||| || |||||||||||||||||    
T  16804720 tgttttgcaatgactattaacaaaagtcaaggccaatctctcaaacaagttggagtatatctctcacaacctgtgttctctcatggtcaact 16804811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 280
Target Start/End: Original strand, 31378870 - 31378991
Alignment:
Q  159 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccacaaccagtattctctcatggtcaactctacgtag 258  Q
    |||||||||||||| ||||||||||| || || || |||||||| || || ||  |||| ||||||||||| || ||||| || ||||| || || || |    
T  31378870 tgttttgcaatgacaatcaacaaaagccaaggacaatcactcaagcaagtcggtgtttatcttccacaacccgtcttctcacacggtcagctttatgttg 31378969  T
Q  259 ccatatcaagggttacatcaag 280  Q
    |  |||| || |||||||||||    
T  31378970 cagtatccagagttacatcaag 31378991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 159 - 226
Target Start/End: Original strand, 12742644 - 12742711
Alignment:
Q  159 tgttttgcaatgaccatcaacaaaagtcaggggcagtcactcaaacaggttggcatttaccttccaca 226  Q
    |||||||||||||| || |||||||||||||| || ||||| || || |||||||| || ||||||||    
T  12742644 tgttttgcaatgactataaacaaaagtcagggacaatcacttaagcaagttggcatctatcttccaca 12742711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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