View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3039_low_15 (Length: 407)

Name: NF3039_low_15
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3039_low_15
NF3039_low_15
[»] chr8 (6 HSPs)
chr8 (19-366)||(11647190-11647541)
chr8 (214-261)||(30913022-30913069)
chr8 (224-265)||(5892713-5892754)
chr8 (233-265)||(22064592-22064624)
chr8 (214-265)||(27662318-27662370)
chr8 (233-265)||(41438944-41438976)
[»] chr7 (8 HSPs)
chr7 (148-265)||(14628707-14628825)
chr7 (224-266)||(28037276-28037318)
chr7 (233-265)||(11989495-11989527)
chr7 (233-265)||(14035967-14035999)
chr7 (233-265)||(14323804-14323836)
chr7 (233-265)||(14345997-14346029)
chr7 (233-265)||(18115322-18115354)
chr7 (233-265)||(18141890-18141922)
[»] chr1 (6 HSPs)
chr1 (93-253)||(9382265-9382427)
chr1 (148-240)||(44856284-44856375)
chr1 (209-265)||(4521528-4521584)
chr1 (211-261)||(19265693-19265742)
chr1 (229-261)||(11110777-11110809)
chr1 (233-265)||(21310734-21310766)
[»] chr2 (7 HSPs)
chr2 (265-366)||(2657399-2657505)
chr2 (207-261)||(20910320-20910374)
chr2 (214-265)||(31475880-31475930)
chr2 (229-259)||(26289523-26289553)
chr2 (224-265)||(24544006-24544047)
chr2 (233-265)||(24967534-24967566)
chr2 (233-265)||(39227550-39227582)
[»] chr6 (6 HSPs)
chr6 (214-265)||(3634414-3634465)
chr6 (229-265)||(6470114-6470150)
chr6 (207-265)||(23072975-23073033)
chr6 (224-265)||(11794106-11794147)
chr6 (233-265)||(19405882-19405914)
chr6 (213-261)||(24193836-24193883)
[»] chr5 (2 HSPs)
chr5 (207-259)||(39838486-39838538)
chr5 (199-264)||(23252590-23252656)
[»] chr3 (5 HSPs)
chr3 (207-261)||(19879631-19879685)
chr3 (224-265)||(45279862-45279903)
chr3 (233-265)||(12491922-12491954)
chr3 (233-265)||(14683245-14683277)
chr3 (229-265)||(17132824-17132860)
[»] chr4 (6 HSPs)
chr4 (216-261)||(14540684-14540729)
chr4 (285-352)||(50705997-50706069)
chr4 (216-261)||(34157936-34157982)
chr4 (224-265)||(16647170-16647211)
chr4 (214-263)||(41635340-41635388)
chr4 (233-265)||(18108695-18108727)
[»] scaffold0608 (1 HSPs)
scaffold0608 (229-261)||(6214-6246)
[»] scaffold0358 (1 HSPs)
scaffold0358 (229-265)||(15716-15752)
[»] scaffold0304 (1 HSPs)
scaffold0304 (233-265)||(5878-5910)
[»] scaffold0216 (1 HSPs)
scaffold0216 (233-265)||(20069-20101)
[»] scaffold0053 (1 HSPs)
scaffold0053 (233-265)||(45332-45364)
[»] scaffold0035 (1 HSPs)
scaffold0035 (233-265)||(25850-25882)
[»] scaffold0013 (1 HSPs)
scaffold0013 (233-265)||(129163-129195)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 366
Target Start/End: Complemental strand, 11647541 - 11647190
Alignment:
Q  19 gttcatcatattcataagtttgttcgacataaataacaaggatgtttaaagttcaagtaataaaagactttgagtttaaaggcaaagaaatttaaagaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11647541 gttcatcatattcataagtttgttcgacataaataacaaggatgtttaaagttcaagtaataaaagactttgagtttaaaggcaaagaaatttaaagaaa 11647442  T
Q  119 gtaaattgcattgctttaatnnnnnnnntggttcatcaaatcattacatagattttaacactcgtttctttctaacgataggtatttaagtttgaagaac 218  Q
    ||||||||||||||||||||        |||||||||||||||||||||| ||| | |||||||||||| ||||||||| ||||||||||||||||||||    
T  11647441 gtaaattgcattgctttaataagaaaa-tggttcatcaaatcattacatatattctgacactcgtttctctctaacgatgggtatttaagtttgaagaac 11647343  T
Q  219 ttttgataactgatttgtgacccttttttcctatgaaaaactactatcggaaatgctccttatagcgaaatcatgcttcatgaaatcttcgcgacatgtg 318  Q
    ||||||||| |||||||||| ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  11647342 ttttgataaatgatttgtga-ccttttttttaatgaaaaactactatcggaaatgctccttatagcgaaatcatgcttcacgaaatctttgcgacatgtg 11647244  T
Q  319 taaaagctaa-----gaatg-ttttttgtaattgcaacatatatggtgggccag 366  Q
    ||||||||||     ||||| |||||||||| |||||||| |||||||||||||    
T  11647243 taaaagctaattcctgaatgtttttttgtaactgcaacatgtatggtgggccag 11647190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 261
Target Start/End: Complemental strand, 30913069 - 30913022
Alignment:
Q  214 agaacttttgataactgatttgtgacccttttttcctatgaaaaacta 261  Q
    |||||||||||||| ||||||| ||||| |||||||||||||||||||    
T  30913069 agaacttttgataaatgatttgcgacccctttttcctatgaaaaacta 30913022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 5892713 - 5892754
Alignment:
Q  224 ataactgatttgtgacccttttttcctatgaaaaactactat 265  Q
    |||| ||||||||||||| |||||| ||||||||||||||||    
T  5892713 ataaatgatttgtgacccgtttttcatatgaaaaactactat 5892754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 22064624 - 22064592
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  22064624 ttgtgacccttttttcctaagaaaaactactat 22064592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 27662318 - 27662370
Alignment:
Q  214 agaacttttgataactgatttgtgaccct-tttttcctatgaaaaactactat 265  Q
    |||||||||||||| ||||||||  |||| |||||||||||| ||||||||||    
T  27662318 agaacttttgataaatgatttgtagccctctttttcctatgacaaactactat 27662370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 41438944 - 41438976
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  41438944 ttgtgacccttttttcctaagaaaaactactat 41438976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 148 - 265
Target Start/End: Complemental strand, 14628825 - 14628707
Alignment:
Q  148 ggttcatcaaatcattacatagattttaacactcgtttctttctaacgataggtattta-agtttgaagaacttttgataactgatttgtgacccttttt 246  Q
    |||||| |||||||||||||| ||| | |||||||||||||| | ||||| |||||||  ||||||||||||||||||||| ||||||||||||||||||    
T  14628825 ggttcaacaaatcattacatacattctgacactcgtttctttgtgacgatgggtatttcgagtttgaagaacttttgataagtgatttgtgacccttttt 14628726  T
Q  247 tcctatgaaaaactactat 265  Q
    | |||||||||||||||||    
T  14628725 ttctatgaaaaactactat 14628707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 28037276 - 28037318
Alignment:
Q  224 ataactgatttgtgacccttttttcctatgaaaaactactatc 266  Q
    |||| |||||||||||||||||||| |||||||| ||||||||    
T  28037276 ataaatgatttgtgacccttttttcatatgaaaagctactatc 28037318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 11989495 - 11989527
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  11989495 ttgtgacccttttttcctaagaaaaactactat 11989527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 14035967 - 14035999
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  14035967 ttgtgacccttttttcctaagaaaaactactat 14035999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 14323804 - 14323836
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  14323804 ttgtgacccttttttcctaagaaaaactactat 14323836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 14345997 - 14346029
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  14345997 ttgtgacccttttttcctaagaaaaactactat 14346029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 18115322 - 18115354
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  18115322 ttgtgacccttttttcctaagaaaaactactat 18115354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 18141890 - 18141922
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  18141890 ttgtgacccttttttcctaagaaaaactactat 18141922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 93 - 253
Target Start/End: Original strand, 9382265 - 9382427
Alignment:
Q  93 tttaaaggcaaagaaatttaaagaaagtaaattgcattgctttaatnnnnnnnntggttcatcaaatcattacatagattttaacactcgtttctttcta 192  Q
    |||||||||||||||| ||||| ||  ||||||||||||| ||  |        ||||||| ||||||||| |||| ||| | |||||||||||| ||||    
T  9382265 tttaaaggcaaagaaacttaaataagataaattgcattgcattgcttataaagatggttcaacaaatcattgcatacattctgacactcgtttctctcta 9382364  T
Q  193 acgataggta-tttaagtttgaagaacttttgataactgatttgtg-acccttttttcctatg 253  Q
    ||| | |||| ||| ||||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  9382365 acgttgggtactttgagtttgaagaacttttgataaatgatttgtgaaccgttttttcctatg 9382427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 44856284 - 44856375
Alignment:
Q  148 ggttcatcaaatcattacatagattttaacactcgtttctttctaacgataggta-tttaagtttgaagaacttttgataactgatttgtgacc 240  Q
    |||||| |||||||||||||| ||| | |||||||||||| ||||||  | |||| ||| ||||||||||||||||||||| ||||||||||||    
T  44856284 ggttcaacaaatcattacatacattatgacactcgtttctctctaac--tgggtactttgagtttgaagaacttttgataagtgatttgtgacc 44856375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 209 - 265
Target Start/End: Complemental strand, 4521584 - 4521528
Alignment:
Q  209 tttgaagaacttttgataactgatttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||| ||| ||||||||||||| ||||| |||||||||||||||||    
T  4521584 tttgaagaacttttgctaaatgatttgtgacccgttttttctatgaaaaactactat 4521528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 19265742 - 19265693
Alignment:
Q  211 tgaagaacttttgataactgatttgtgacccttttttcctatgaaaaacta 261  Q
    ||||||||||||| ||| |||||||| || |||||||||||||||||||||    
T  19265742 tgaagaacttttgttaa-tgatttgtaactcttttttcctatgaaaaacta 19265693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 11110777 - 11110809
Alignment:
Q  229 tgatttgtgacccttttttcctatgaaaaacta 261  Q
    ||||||||||||| |||||||||||||||||||    
T  11110777 tgatttgtgacccgtttttcctatgaaaaacta 11110809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 21310766 - 21310734
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  21310766 ttgtgacccttttttcctaagaaaaactactat 21310734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 366
Target Start/End: Complemental strand, 2657505 - 2657399
Alignment:
Q  265 tcggaaatgctccttatagcgaaatcatgcttcatgaaatcttcgcgacatgtgtaaaagcta-----agaatgttttttgtaattgcaacatatatggt 359  Q
    |||||||||||| ||| | | ||||||||||||| ||||||| ||||||||||||||||||||      ||||||||||||||  || ||||| ||||||    
T  2657505 tcggaaatgctctttacaacaaaatcatgcttcacgaaatctccgcgacatgtgtaaaagctatttcctgaatgttttttgtacctgtaacatgtatggt 2657406  T
Q  360 gggccag 366  Q
    |||||||    
T  2657405 gggccag 2657399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 20910374 - 20910320
Alignment:
Q  207 agtttgaagaacttttgataactgatttgtgacccttttttcctatgaaaaacta 261  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  20910374 agtttgaagaacttttgataagtgatttgtgaccattttttcctattaaaaacta 20910320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 31475880 - 31475930
Alignment:
Q  214 agaacttttgataactgatttgtgacccttttttcctatgaaaaactactat 265  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  31475880 agaacttttgctaa-tgatttgtgacccttttttcctatgaaaaactactat 31475930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 259
Target Start/End: Complemental strand, 26289553 - 26289523
Alignment:
Q  229 tgatttgtgacccttttttcctatgaaaaac 259  Q
    |||||||||||||||||||||||||||||||    
T  26289553 tgatttgtgacccttttttcctatgaaaaac 26289523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 24544006 - 24544047
Alignment:
Q  224 ataactgatttgtgacccttttttcctatgaaaaactactat 265  Q
    |||| ||||||||||||| ||||||||||| |||||||||||    
T  24544006 ataagtgatttgtgacccgtttttcctatggaaaactactat 24544047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 24967566 - 24967534
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  24967566 ttgtgacccttttttcctaagaaaaactactat 24967534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 39227550 - 39227582
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  39227550 ttgtgacccttttttcctaagaaaaactactat 39227582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 265
Target Start/End: Original strand, 3634414 - 3634465
Alignment:
Q  214 agaacttttgataactgatttgtgacccttttttcctatgaaaaactactat 265  Q
    |||||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  3634414 agaacttttgctaaatgatttgtgacccgtttttcctatgaaaaactactat 3634465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 6470150 - 6470114
Alignment:
Q  229 tgatttgtgacccttttttcctatgaaaaactactat 265  Q
    |||||||||||||||||||||||||||||||||||||    
T  6470150 tgatttgtgacccttttttcctatgaaaaactactat 6470114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 23073033 - 23072975
Alignment:
Q  207 agtttgaagaacttttgataactgatttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||| ||||||||| ||||||||||| | |||||| ||||||||| ||||||    
T  23073033 agtttgaagaatttttgataaatgatttgtgacgcatttttcttatgaaaaattactat 23072975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 11794147 - 11794106
Alignment:
Q  224 ataactgatttgtgacccttttttcctatgaaaaactactat 265  Q
    |||| ||| ||||||||||||||||||||| |||||||||||    
T  11794147 ataattgaattgtgacccttttttcctatggaaaactactat 11794106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 19405882 - 19405914
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  19405882 ttgtgacccttttttcctaagaaaaactactat 19405914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 24193883 - 24193836
Alignment:
Q  213 aagaacttttgataactgatttgtgacccttttttcctatgaaaaacta 261  Q
    ||||||||||||||| ||||||||||||  |||||| ||||||||||||    
T  24193883 aagaacttttgataa-tgatttgtgacctctttttcttatgaaaaacta 24193836  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 39838538 - 39838486
Alignment:
Q  207 agtttgaagaacttttgataactgatttgtgacccttttttcctatgaaaaac 259  Q
    |||||| |||||||||||||| ||||||| ||| |||||||||||||||||||    
T  39838538 agtttgtagaacttttgataaatgatttgcgactcttttttcctatgaaaaac 39838486  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 23252590 - 23252656
Alignment:
Q  199 ggtattta-agtttgaagaacttttgataactgatttgtgacccttttttcctatgaaaaactacta 264  Q
    |||||||| ||||||||||||||||| | | |||||| | |||| |||||||||||||||| |||||    
T  23252590 ggtatttagagtttgaagaacttttgcttaatgattttttacccctttttcctatgaaaaattacta 23252656  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 261
Target Start/End: Original strand, 19879631 - 19879685
Alignment:
Q  207 agtttgaagaacttttgataactgatttgtgacccttttttcctatgaaaaacta 261  Q
    ||||||||||||||||||||| | |||||||||   |||||||||||||||||||    
T  19879631 agtttgaagaacttttgataaataatttgtgacttatttttcctatgaaaaacta 19879685  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 265
Target Start/End: Complemental strand, 45279903 - 45279862
Alignment:
Q  224 ataactgatttgtgacccttttttcctatgaaaaactactat 265  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  45279903 ataagtgatttgtgacccttttttcttatgaaaaactactat 45279862  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 12491954 - 12491922
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  12491954 ttgtgacccttttttcctaagaaaaactactat 12491922  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 14683245 - 14683277
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  14683245 ttgtgacccttttttcctaagaaaaactactat 14683277  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 17132824 - 17132860
Alignment:
Q  229 tgatttgtgacccttttttcctatgaaaaactactat 265  Q
    |||||||||| || |||||||||||||||||||||||    
T  17132824 tgatttgtgaaccgtttttcctatgaaaaactactat 17132860  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 216 - 261
Target Start/End: Original strand, 14540684 - 14540729
Alignment:
Q  216 aacttttgataactgatttgtgacccttttttcctatgaaaaacta 261  Q
    |||||||| ||| ||||||||||||| |||||||||||||||||||    
T  14540684 aacttttgttaagtgatttgtgacccatttttcctatgaaaaacta 14540729  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 352
Target Start/End: Original strand, 50705997 - 50706069
Alignment:
Q  285 gaaatcatgcttcatgaaatcttcgcgacatgtgtaaaagctaa-----gaatgttttttgtaattgcaacat 352  Q
    |||||||| ||||| ||||||| ||| |||||||||||||||||     ||||||||||||||| ||||||||    
T  50705997 gaaatcatccttcacgaaatctacgcaacatgtgtaaaagctaattcctgaatgttttttgtaactgcaacat 50706069  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 261
Target Start/End: Complemental strand, 34157982 - 34157936
Alignment:
Q  216 aacttttgataactgatttgtgaccctt-ttttcctatgaaaaacta 261  Q
    |||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  34157982 aacttttgataaatgatttgtgaccctttttttcatatgaaaaacta 34157936  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 265
Target Start/End: Original strand, 16647170 - 16647211
Alignment:
Q  224 ataactgatttgtgacccttttttcctatgaaaaactactat 265  Q
    |||| ||||||| |||||||||||| ||||||||||||||||    
T  16647170 ataagtgatttgcgacccttttttcttatgaaaaactactat 16647211  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Complemental strand, 41635388 - 41635340
Alignment:
Q  214 agaacttttgataactgatttgtgacccttttttcctatgaaaaactact 263  Q
    |||||||||| ||| ||||||||||||| ||||| |||||||||||||||    
T  41635388 agaacttttgttaa-tgatttgtgaccccttttttctatgaaaaactact 41635340  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 18108727 - 18108695
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  18108727 ttgtgacccttttttcctaagaaaaactactat 18108695  T

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Target: scaffold0608 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 261
Target Start/End: Original strand, 6214 - 6246
Alignment:
Q  229 tgatttgtgacccttttttcctatgaaaaacta 261  Q
    ||||||||||||| |||||||||||||||||||    
T  6214 tgatttgtgacccgtttttcctatgaaaaacta 6246  T

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Target: scaffold0358 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0358
Description:

Target: scaffold0358; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 15752 - 15716
Alignment:
Q  229 tgatttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||| ||||||||| |||||||||||||    
T  15752 tgatttgtgacccgtttttcctaagaaaaactactat 15716  T

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Target: scaffold0304 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 5878 - 5910
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  5878 ttgtgacccttttttcctaagaaaaactactat 5910  T

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Target: scaffold0216 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 20069 - 20101
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  20069 ttgtgacccttttttcctaagaaaaactactat 20101  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 45332 - 45364
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  45332 ttgtgacccttttttcctaagaaaaactactat 45364  T

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Target: scaffold0035 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 25850 - 25882
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||| |||||||||||||||||||||||    
T  25850 ttgtgacccgtttttcctatgaaaaactactat 25882  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 129195 - 129163
Alignment:
Q  233 ttgtgacccttttttcctatgaaaaactactat 265  Q
    ||||||||||||||||||| |||||||||||||    
T  129195 ttgtgacccttttttcctaagaaaaactactat 129163  T

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