View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_16 (Length: 402)
Name: NF3039_low_16
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_16 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 402
Target Start/End: Original strand, 7626346 - 7626730
Alignment:
| Q |
18 |
atctaagttcaaatcttatcaagaattaaggatatatacacataattattgttaaaacatacaaattgtgttttgcactcaagcaagttgtgatcaattg |
117 |
Q |
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| T |
7626346 |
atctaagttcaaatcttatcaagaattaaggatatatgcacataattattgttaaaacatacaaattgtgttttgcattcaagcaagttgtgatcaattg |
7626445 |
T |
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| Q |
118 |
aaaggttnnnnnnnnnnnnnnnnnctgaaagaaacagtgttatatatagctggcaagttgatgtagttgataacttgatgaatattatactacccttaac |
217 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
7626446 |
aaaggttaaaacaaaaagaaaaaactgaaagaaacagtgttatatatagctggcaagttgatgtagttgataacttgatgaatattatagtactcttaac |
7626545 |
T |
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| Q |
218 |
atttgtcacacacatgtaatgtgtttggaatgatcgatcttgtacattattcagtgtactaaaccttaaaacaatagtgttagtgtacgtgggttctatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7626546 |
atttgtcacacacatgtaatgtgtttggaatgatcgatcttgtacattattcagtgtactaaaccttaaaacaatagtgttagtgtacgtgggttctatc |
7626645 |
T |
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| Q |
318 |
acaagttaattggagcaggtgaaattagggaattggtctggtaagtgtgagacattcccatgccatgtatctgtgctcctcctca |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| || |||||| |
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| T |
7626646 |
acaagttaattggagcaggtgaaattagggaattggtctggtaagtgtgagacattcccatgccatgtgtgtgtgttcttcctca |
7626730 |
T |
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