View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3039_low_19 (Length: 388)
Name: NF3039_low_19
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 25 - 366
Target Start/End: Complemental strand, 31333666 - 31333325
Alignment:
| Q |
25 |
ataaataaagatggtttacagagattttattgattttatatattcagaaaagtaactacaaagaaaagtatgcaacaaatatgcaaaacccatgctacca |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31333666 |
ataaataaagatgttttacagagattttattgattttatatattcagaaaagtaactacaaagaaaagtatgcaacaaatatgcaaaacccatgctacca |
31333567 |
T |
|
| Q |
125 |
aagagaacttcaataaggaggacacaagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaacgcactccacaatcaatagctt |
224 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31333566 |
aagagaacttcaataagtaggacataagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaatgcactccacaatcaatagctt |
31333467 |
T |
|
| Q |
225 |
aataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatttctcatagaagtaaatctga |
324 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31333466 |
aataacttattcatttgtcatgctcacataacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatttctcatagaagtaaatctga |
31333367 |
T |
|
| Q |
325 |
aaacaaaaaccattataaattcacaattcaaacttcatagca |
366 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31333366 |
aaacaaaaaacattataaattcacaattcaaacttcatagca |
31333325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 25 - 366
Target Start/End: Complemental strand, 31340396 - 31340055
Alignment:
| Q |
25 |
ataaataaagatggtttacagagattttattgattttatatattcagaaaagtaactacaaagaaaagtatgcaacaaatatgcaaaacccatgctacca |
124 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31340396 |
ataaataaagatgttttacagagattttattgattttatatattcagaaaagtaactacaaagaaaagtatgcaacaaatatgcaaaacccatgctacca |
31340297 |
T |
|
| Q |
125 |
aagagaacttcaataaggaggacacaagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaacgcactccacaatcaatagctt |
224 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31340296 |
aagagaacttcaataagtaggacataagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaatgcactccacaatcaatagctt |
31340197 |
T |
|
| Q |
225 |
aataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatttctcatagaagtaaatctga |
324 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31340196 |
aataacttattcatttgtcatgcacacataacatgatgagcatatatacaattacgttcagaaagaaaacaaaagtaatttctcatagaagtaaatctga |
31340097 |
T |
|
| Q |
325 |
aaacaaaaaccattataaattcacaattcaaacttcatagca |
366 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31340096 |
aaacaaaaaacattataaattcacaattcaaacttcatagca |
31340055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 45245572 - 45245523
Alignment:
| Q |
44 |
agagattttattgattttatatattcagaaaagtaactacaaagaaaagt |
93 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
45245572 |
agagattctattgattttatatattcagaaaagtaacagcagagaaaagt |
45245523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 105 - 371
Target Start/End: Original strand, 644374 - 644652
Alignment:
| Q |
105 |
atgcaaaacccatgctaccaaagagaacttcaataaggaggacacaagaatttgttcaagtaatataagtcatggcaaagcgacgacaagcaatgcaacg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
644374 |
atgcaaaacccatgctaccaaagagaacttaaataagtaggaaacaagaatttgttcaagtaatataagtcatggcaaagcgacaacaagcaatgcaatg |
644473 |
T |
|
| Q |
205 |
cactccacaatcaatagctt------------aataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaagaaa |
292 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| | ||||| | |
|
|
| T |
644474 |
cactccacaatcaatagcttgcattatatattaataacttattcatttgtcatgcacacataacatgatgagcatatatacaattacgttaaaaaagaga |
644573 |
T |
|
| Q |
293 |
acaaaagtaatttctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagcaaacaa |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
644574 |
acaaaagtaatttctcatagaagtaaatctgaaaaccaaaaacattagaaattcacaattcaaacttcatagcaaacaa |
644652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 25 - 114
Target Start/End: Original strand, 644267 - 644356
Alignment:
| Q |
25 |
ataaataaagatggtttacagagattttattgattttatatattcagaaaagtaactacaaagaaaagtatgcaacaaatatgcaaaacc |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
644267 |
ataaataaagattttttacagagattttattgattttatatattcagaaaagtaactataaggaaaagtatgctacaaatatgcaaaacc |
644356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 330
Target Start/End: Original strand, 546594 - 546622
Alignment:
| Q |
302 |
atttctcatagaagtaaatctgaaaacaa |
330 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
546594 |
atttctcatagaagtaaatctgaaaacaa |
546622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 190 - 371
Target Start/End: Original strand, 1656879 - 1657060
Alignment:
| Q |
190 |
acaagcaatgcaacgcactccacaatcaatagcttaataacttattcatttgtcatgcgcacgtaacatgatgagcatatatacaattacgttcagaaag |
289 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1656879 |
acaagcaatgcaatgcactccacaatcaatagcttaataacttattcatttgtcatgcgcacataacatgatgagcatatatacaattacgttcagaaag |
1656978 |
T |
|
| Q |
290 |
aaaacaaaagtaatttctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagcaaacaa |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1656979 |
aaaacaaaagtaatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagcaaacaa |
1657060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 300 - 371
Target Start/End: Complemental strand, 28246654 - 28246583
Alignment:
| Q |
300 |
taatttctcatagaagtaaatctgaaaacaaaaaccattataaattcacaattcaaacttcatagcaaacaa |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28246654 |
taatttctcatagaagtaaatctgaaaacaaaaaacattataaattcacaattcaaacttcatagcaaacaa |
28246583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 371
Target Start/End: Complemental strand, 11936599 - 11936565
Alignment:
| Q |
337 |
ttataaattcacaattcaaacttcatagcaaacaa |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
11936599 |
ttataaattcacaattcaaacttcatagcaaacaa |
11936565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 337 - 371
Target Start/End: Complemental strand, 11948579 - 11948545
Alignment:
| Q |
337 |
ttataaattcacaattcaaacttcatagcaaacaa |
371 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
11948579 |
ttataaattcacaattcaaacttcatagcaaacaa |
11948545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University