View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_2 (Length: 786)
Name: NF3039_low_2
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 282 - 707
Target Start/End: Original strand, 8355782 - 8356207
Alignment:
| Q |
282 |
aaaacaacttttttgaatttgaaagtaactaatagggtgacggaaagnnnnnnntcccatgtaggcaggcaagcgggaaatgctgatgtggagaagtgat |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8355782 |
aaaacaacttttttgaatttgaaagtaactaatagggtgacggaacgaaaaaaatcccatgtaggcaggcaagcgggaaatgctgatgtggagaagtgat |
8355881 |
T |
|
| Q |
382 |
ctatttaagtttagttgatctaccatcttataaattctataaaaataatataatccatttatcaaaagttgcacagaaaatcagaagacaatttagttct |
481 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8355882 |
ctatttcagtttagttgatctaccatcttataaattctacaaaaataatataatccatttatcaaaagttgcacagaaaatcagaagacaatttagttct |
8355981 |
T |
|
| Q |
482 |
ggttgatgctaaactaattcagcaatgataattaaaatgaggcaagaataatatatttttctttacacattaacaatacacaaagtgcattcagatgttc |
581 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8355982 |
ggttgatgctaaactaattcagcaatgataattaaaatgaggcaagaataatatatttttctttacacattaacaatacacaaagtgcattcagatgttc |
8356081 |
T |
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| Q |
582 |
aacagtggaaaaaatgttaccttgtttaatctcaaatttatcatcatcaccctatataagttctcaacccccaacatagaagaaaacagtatactagtga |
681 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8356082 |
aacagtggaaaaaatgtgaccttgtttaatctcaaatttatcatcatcaccctatataagttctcaacccccaacatagaagaaaacagtatactagtga |
8356181 |
T |
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| Q |
682 |
acaaggctggaggacccgtacaatca |
707 |
Q |
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| T |
8356182 |
acaaggctggaggaaccgtacaatca |
8356207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 39 - 286
Target Start/End: Original strand, 8355517 - 8355761
Alignment:
| Q |
39 |
tgttccagatcgccaccactagtctggaaagatagtgactttgttatgaacaacttttgggatgttcctaaatagaagagaaattatactaagatcagaa |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8355517 |
tgttccagatcgccaccactagtctggaaagatagtgagtttgttatgaacaacttttgggatgttcctaaatagaagagaaattatactaaga---gaa |
8355613 |
T |
|
| Q |
139 |
taaaaactacactaagagtgtgtttggatagagaattttaatcggggaattatactatgaattggtaatcgcctttgttttggcatatatgaagaaattc |
238 |
Q |
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| T |
8355614 |
taaaaactacactaaaagtgtgtttggatagagaattttaatcggggaattatactatgaattggtaatcgcctttgttttggcatatatgaagaaattc |
8355713 |
T |
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| Q |
239 |
aagacattgattcaacgatttttatttagttattccagctcataaaac |
286 |
Q |
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| T |
8355714 |
aagacattgattcaacgatttttatttagttattccagctcataaaac |
8355761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 10 - 178
Target Start/End: Complemental strand, 8482788 - 8482621
Alignment:
| Q |
10 |
acatcatcatgagtacaaagtatttccaatgttccagatcgccaccactagtctggaaagata-gtgactttgttatgaacaacttttgggatgttccta |
108 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
8482788 |
acatcatcataagtacaaagtatttccaatgttccagatcaccaccactagtctggaaagataagtgagtttgttatgaacaacttttgggatgttccta |
8482689 |
T |
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| Q |
109 |
aatagaagagaaattatactaagatcagaataaaaactacactaagagtgtgtttggatagagaatttta |
178 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||| |
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| T |
8482688 |
aatagaagagaaattatactaagatcagaataaaaactcctcta--agtgtgtttggatagagaatttta |
8482621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 709 - 769
Target Start/End: Original strand, 8356335 - 8356395
Alignment:
| Q |
709 |
ctcaacagctataagtaatgtaacagtgaatgatgttatacgttggttttataacaaaact |
769 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8356335 |
ctcaacagctataagtaatgtaacaatgaatgatgttatacgttggttttataacaaaact |
8356395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 679 - 769
Target Start/End: Original strand, 8433167 - 8433255
Alignment:
| Q |
679 |
tgaacaaggctggaggacccgtacaatcagctcaacagctataagtaatgtaacagtgaatgatgttatacgttggttttataacaaaact |
769 |
Q |
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||||||| |||||||||||| |||||||| ||||||||| |||| ||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
8433167 |
tgaacaaagctggaggacccttacaatcaactcaacagc--taagcaatgtaacaatgaatgaaaccatacgttggttttataacaaaact |
8433255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 149
Target Start/End: Original strand, 37485994 - 37486059
Alignment:
| Q |
81 |
gttatgaacaacttttgggatgttcctaaatagaagagaaattatactaagatcagaataaaaactaca |
149 |
Q |
| |
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||||||||||||||||||| ||||| ||||| ||||||||| ||| ||||| ||||||||||||||| |
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| T |
37485994 |
gttatgaacaacttttgggttgttcataaatggaagagaaactatgctaag---agaataaaaactaca |
37486059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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