View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3039_low_20 (Length: 387)
Name: NF3039_low_20
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 129 - 336
Target Start/End: Original strand, 10900487 - 10900695
Alignment:
| Q |
129 |
gttagtaaagcaagaaacacaagagttgatattttaatcatctataatctgttatacacgtgtatataataccaa-nnnnnnnnnnnnnattaagattga |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
|
|
| T |
10900487 |
gttagtaaagcaagaaacacaagagttgatattttaatcatctataatctgttatacacgtgtatataataccaattttttttttttttattaagactga |
10900586 |
T |
|
| Q |
228 |
taccgttcattttacgcaataannnnnnnnnnnnnnngaaagaactcaataaaaaatattgttaactcatagtagcacaatccgactaaaatacatgttt |
327 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10900587 |
taccgttcattttacgcaataattttttttgttttttgaaagaactcaattaaaaatattgttaactcatagtagcacaatccgactaaaatacatgttt |
10900686 |
T |
|
| Q |
328 |
gattttata |
336 |
Q |
| |
|
||||||||| |
|
|
| T |
10900687 |
gattttata |
10900695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 10899835 - 10899923
Alignment:
| Q |
17 |
cagcaacattaaaacttttagggagaatttatcgtccatttaaatcccacaaagtttgagaaattagtcttcgcaagtatacctgattt |
105 |
Q |
| |
|
||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10899835 |
cagcaacgttaaaacttttagagataatttatcgtccatttaaatcccacaaagttcgagaaattagtcttcgcaagtatacctgattt |
10899923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 28099311 - 28099343
Alignment:
| Q |
25 |
ttaaaacttttagggagaatttatcgtccattt |
57 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
28099311 |
ttaaaacttttagggagaatttgtcgtccattt |
28099343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 24359624 - 24359693
Alignment:
| Q |
17 |
cagcaacattaaaacttttagggagaatttatcgtccatttaaatcccacaaagtttgagaaattagtct |
86 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | |||||||| | ||||||| | ||||| ||||||||| |
|
|
| T |
24359624 |
cagcaacattaaaacttttagggagagtttgtggtccatttgagccccacaaggcttgagcaattagtct |
24359693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 22297622 - 22297578
Alignment:
| Q |
25 |
ttaaaacttttagggagaatttatcgtccatttaaatcccacaaa |
69 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
22297622 |
ttaaaacttttagggagaattttccgtctatttaaatcccacaaa |
22297578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 19238872 - 19238806
Alignment:
| Q |
25 |
ttaaaacttttagggagaatttatcgtccatttaaatcccacaaagtttgagaaattagtcttcgca |
91 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| || || ||||||||| |||||| ||| |||| |
|
|
| T |
19238872 |
ttaaaacttttagggagagtttgtcgtccatttaggtctcataaagtttgataaattaatctccgca |
19238806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 25241204 - 25241155
Alignment:
| Q |
19 |
gcaacattaaaacttttagggagaatttatcgtccatttaaatcccacaa |
68 |
Q |
| |
|
||||| |||||||||||||||||| ||| ||| ||||||||||| ||||| |
|
|
| T |
25241204 |
gcaaccttaaaacttttagggagagtttgtcgcccatttaaatctcacaa |
25241155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University