View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3039_low_21 (Length: 372)
Name: NF3039_low_21
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 39300331 - 39299988
Alignment:
| Q |
11 |
cacagacgagagagatattcatgttgaaaaagacagagtcccaaagatgacaactcattttgaacaacttacagtggtagacaaggaaccaccacatggt |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39300331 |
cacaaacgagagagatattcatgttgaaaaagacagagtcccaaagatgactacccattttgaacaacttacagtggtagacaaggaaccaccacatggt |
39300232 |
T |
|
| Q |
111 |
agcattgaagcattacaaggtggtgaaatgaacaaagatcatgcaggaaaagccattggagatattggtggaagaggaagatcaagagagactcatgaac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39300231 |
agcattgaagcattacaaggtggtgaaatgaacaaagatcatgcaggaaaagccattggagatattggtggaagaggaagatcaagagagactcatgaac |
39300132 |
T |
|
| Q |
211 |
ttggttcaaatgtgaagcagagtgatagggatcatcatcatgctgctgctaccaaccttggacacaaacaaggttttcagtctcactctgatcaaaatgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
39300131 |
ttggttcaaatgtgaagcagagtgatagggatcatcatcatgctgctgctacgaaccttggtcacaagcaaggttttcagtctcactctgatcaaaatgt |
39300032 |
T |
|
| Q |
311 |
gaaacagagtgagagggatcgtcatcatgctacaaatgtagttg |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39300031 |
gaaacagagtgagagggatcgtcatcatgctacaaatgtagttg |
39299988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 39299940 - 39299888
Alignment:
| Q |
168 |
ggagatattggtggaagaggaagatcaagagagactcatgaacttggttcaaa |
220 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
39299940 |
ggagatattggtggaagaggaagagaaagagagagccatgaacttggttcaaa |
39299888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University