View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_23 (Length: 368)
Name: NF3039_low_23
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 42076518 - 42076871
Alignment:
| Q |
18 |
aaagtgccatgcaaaacaagaaggtgacacgttatatatggtggattgtggagtgagtgcaaggaagtattgtgtatacgcgtgtatattatgtatatgt |
117 |
Q |
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| T |
42076518 |
aaagtgccatgcaaaacaagaaggtgacacgttatatatggtggattgtggagtgagcgcaaggaagtattgtgtatacgcgtgtatattatgtatgtgt |
42076617 |
T |
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| Q |
118 |
gattgatactgtgaacctacctagtaatcttttgtatgatatttta------ttttatggttgatgtcgtttagtacaagttttctttgcttcttattat |
211 |
Q |
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| T |
42076618 |
gattgatactgtgaacctacctagtaatcttttgtatgatattttaattttattttatggttgatgtcgtttagtacaagttttctttgcttcttattat |
42076717 |
T |
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| Q |
212 |
tat---ggtgttttgtttctagtttcttcttttct--cttaattggaaaatattcgatgaacctgaatgagacctttgttgtatagaatagaactctgtt |
306 |
Q |
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| T |
42076718 |
tattatggtgttttgtttctagtttcttcttttctttcttaattggaaaatattcgatgaacctgaatgagacctttgttggatagaatagaactctgtt |
42076817 |
T |
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| Q |
307 |
gctgccgtatgttggtttaatacataaaattccacagctacctttacctttgct |
360 |
Q |
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| T |
42076818 |
gctgccgtatgttggtttaatacataaaattccacagctacctttacctttgct |
42076871 |
T |
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