View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_24 (Length: 352)
Name: NF3039_low_24
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 2 - 348
Target Start/End: Original strand, 45109308 - 45109654
Alignment:
| Q |
2 |
cacctccgcatgcacaaacaagatgagaaaatgtaaataatctaaacttttcttagcacattatattagattaaatttgttttgttaacaacaatacgtt |
101 |
Q |
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| T |
45109308 |
cacctccgcatgcacaaacaagatgagaaaatgtaaataatctaaacttttcttagcacattatattagattaaatttgttttgttaacaacaatacgtt |
45109407 |
T |
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| Q |
102 |
aaactacatgaaataaagattattgtataatttggtgtattgattattggtcttggtaatagatgggaagcaaagttgaggagtgtatctttgagacttg |
201 |
Q |
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| T |
45109408 |
aaactacatgaaataaagattattgtataatttggtgtattgattattggtcttggtaatagatgggaagcaaagttgaggagtgtatctttgagacttg |
45109507 |
T |
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| Q |
202 |
cttacataggaaacatatgtttggcatttttgttctttccagtcacaagaatgtcttctattctgcctcttgttggactcacatctgagtcaagcatcaa |
301 |
Q |
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| T |
45109508 |
cttacataggaaacatatgtttggcatttttgttctttccagtcacaagaatgtcttctattctgcctcttgttggactcacatctgagtcaagcatcaa |
45109607 |
T |
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| Q |
302 |
gtatcatatctggcttggacatttatctatggttctctgtgctgctc |
348 |
Q |
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| T |
45109608 |
gtatcatatctggcttggacaattatctatggttctctttgctgctc |
45109654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 161 - 346
Target Start/End: Original strand, 45126663 - 45126848
Alignment:
| Q |
161 |
tagatgggaagcaaagttgaggagtgtatctttgagacttgcttacataggaaacatatgtttggcatttttgttctttccagtcacaagaatgtcttct |
260 |
Q |
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| T |
45126663 |
tagatgggaagcgaagttcaggagtgtatttttgagactaggttacataggaaacatatgttgggcatttttgttctttccggttacaagagggtcttcc |
45126762 |
T |
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| Q |
261 |
attctgcctcttgttggactcacatctgagtcaagcatcaagtatcatatctggcttggacatttatctatggttctctgtgctgc |
346 |
Q |
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| T |
45126763 |
attctgcgtcttgttggactcacatctgagtcaagcatcaaatatcatatctggcttggacaattatctatggttctttttgctgc |
45126848 |
T |
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