View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3039_low_26 (Length: 319)

Name: NF3039_low_26
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3039_low_26
NF3039_low_26
[»] chr5 (1 HSPs)
chr5 (9-296)||(17091055-17091342)
[»] chr6 (2 HSPs)
chr6 (72-143)||(7871835-7871906)
chr6 (16-64)||(7819088-7819136)
[»] chr3 (2 HSPs)
chr3 (82-148)||(43684923-43684989)
chr3 (88-148)||(43693979-43694039)
[»] chr1 (1 HSPs)
chr1 (82-141)||(37997052-37997111)
[»] chr7 (1 HSPs)
chr7 (96-143)||(19317138-19317185)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 17091342 - 17091055
Alignment:
Q  9 agcacagacaaatacacgcctagatcacgcaaataccagaaacagagttgcaccctcaggctgttaaacaatgcatccattgaactgatactcgctctaa 108  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17091342 agcacagacaaatacacgcctagaccacgcaaataccagaaacagagttgcaccctcaggctgttaaacaatgcatccattgaaccgatactcgctctaa 17091243  T
Q  109 ccaacttagaaaaggtcaagaatttaaacccttctgcttcaggtgaaaatgtgctgataaaagcatgtgaaaagatcataaagttgtaaaaaggggtagt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17091242 ccaacttagaaaaggtcaagaatttaaacccttctgcttcaggtgaaaatgtgctgataaaagcatgtgaaaagatcataaagttgtaaaaaggggtagt 17091143  T
Q  209 tttactagacaaatcagaaagtgttgtaaacaaacaggnnnnnnnctgggagaggaatatgcataatctaaatcagctaggaagtgct 296  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  17091142 tttactagacaaatcagaaagtgttgtaaacaaacaggaaaaaaactgggagaggaatatgcataatctaaatcagctaggaagtgct 17091055  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 7871906 - 7871835
Alignment:
Q  72 ttaaacaatgcatccattgaactgatactcgctctaaccaacttagaaaaggtcaagaatttaaacccttct 143  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||| || |||||  ||||||| ||||||    
T  7871906 ttaaacaaagcatccattgaactaatactcgctctaaccaacttagacaatgtcaaagatttaaaaccttct 7871835  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 7819136 - 7819088
Alignment:
Q  16 acaaatacacgcctagatcacgcaaataccagaaacagagttgcaccct 64  Q
    ||||||||||||||||  || ||||| ||||||||||||||||||||||    
T  7819136 acaaatacacgcctagtgcatgcaaaaaccagaaacagagttgcaccct 7819088  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 43684923 - 43684989
Alignment:
Q  82 catccattgaactgatactcgctctaaccaacttagaaaaggtcaagaatttaaacccttctgcttc 148  Q
    |||| |||||||||||||| ||||||||||||||||| |||| |||| |||||||| ||| ||||||    
T  43684923 catcgattgaactgatactggctctaaccaacttagacaaggacaaggatttaaactcttttgcttc 43684989  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 148
Target Start/End: Original strand, 43693979 - 43694039
Alignment:
Q  88 ttgaactgatactcgctctaaccaacttagaaaaggtcaagaatttaaacccttctgcttc 148  Q
    ||||||||||| | ||||||||||||||||| |||| |||| |||||||| ||| ||||||    
T  43693979 ttgaactgatattggctctaaccaacttagacaaggacaaggatttaaactcttttgcttc 43694039  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 37997052 - 37997111
Alignment:
Q  82 catccattgaactgatactcgctctaaccaacttagaaaaggtcaagaatttaaaccctt 141  Q
    |||||||||||||||| |||||||||| ||| ||||| ||||||||| |||| |||||||    
T  37997052 catccattgaactgattctcgctctaatcaatttagacaaggtcaaggatttcaaccctt 37997111  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 19317138 - 19317185
Alignment:
Q  96 atactcgctctaaccaacttagaaaaggtcaagaatttaaacccttct 143  Q
    ||||||||||||||||||||||| || |||||| |||||| |||||||    
T  19317138 atactcgctctaaccaacttagacaatgtcaaggatttaatcccttct 19317185  T

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