View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_27 (Length: 318)
Name: NF3039_low_27
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 50505418 - 50505649
Alignment:
| Q |
17 |
acatcttatataggtataggcttgatcttgaagtgaagtgaaataagattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaatagg |
116 |
Q |
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| T |
50505418 |
acatcttatataggtataggcttgatcttgaagtgaagtgaaataagattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaatagg |
50505517 |
T |
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| Q |
117 |
aataagcaaaggcattatctgataagaaaaatacaagctaaacaaaatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505518 |
aataagcaaaggcattatctgataagaaaaatacaagctaaacaaaatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatg |
50505617 |
T |
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| Q |
217 |
atgaaaccattgcataacagcggacttttaaa |
248 |
Q |
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| T |
50505618 |
atgaaaccattgcataacagcggacttttaaa |
50505649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 50505682 - 50505746
Alignment:
| Q |
244 |
ttaaaaccattgcataaactatatcggtgatttttaggttcgtgtatgatagtgattgatctgtg |
308 |
Q |
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| T |
50505682 |
ttaaaaccattgcataaactatatcggtgatttttaggttcgtgtatgatagtgattgatgtgtg |
50505746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 55280860 - 55280797
Alignment:
| Q |
31 |
tataggcttgatcttgaagtgaagtgaaataagattgagaacaaagcacctcaaatcctgcaaa |
94 |
Q |
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| T |
55280860 |
tataggcttgatcttgaagtgaagtgaaataagagagaagacaaagcacttcaaatcctgcaaa |
55280797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 28733814 - 28733612
Alignment:
| Q |
17 |
acatcttatataggtataggcttgatcttgaagtgaagtgaaataagattgagaacaaagcacctcaaatcctgcaaaaatatttagtataactaatagg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||| |
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| T |
28733814 |
acatcttatataggtataggcttgatcttgaagtgaagtgaaataagattgagaacaaagcacttcaaatcctgcaaaaatgttta---taattaatagg |
28733718 |
T |
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| Q |
117 |
aataagcaaaggcattatctgataagaaaaatacaagctaaacaaaatactaacatatcatggcttcatggggaatatagaaatcattatctaaaacatg |
216 |
Q |
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|||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||| |
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| T |
28733717 |
cataaacaaagacattatctgataagaaaaatataagcaaaacaaaatactaacatatcatggcctcatggggaatatataaatcattatctaaaatatg |
28733618 |
T |
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| Q |
217 |
atgaaa |
222 |
Q |
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|||||| |
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| T |
28733617 |
atgaaa |
28733612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 246 - 303
Target Start/End: Complemental strand, 28733556 - 28733499
Alignment:
| Q |
246 |
aaaaccattgcataaactatatcggtgatttttaggttcgtgtatgatagtgattgat |
303 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
28733556 |
aaaaccattgcataaactatattggtgatttttaggttcgtgcatgatagtgattgat |
28733499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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