View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3039_low_28 (Length: 301)
Name: NF3039_low_28
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 30042626 - 30042358
Alignment:
| Q |
16 |
aacctgtgtttgatgaaattgatgtgtcatgagtttgatatgttggaaggtttgtatcaaattgtacttgaagaaaagggagagagttttcgctacagat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
30042626 |
aacctgtgtttgatgaaattgatgtgtcatgagtttgatatgttggaaggtttgtatcaaattgtacttgaagaaaaaggagagagttttcgctacagat |
30042527 |
T |
|
| Q |
116 |
accgttaatgatgatactgtcatgtctttgttgaatattgttgaggggaatgagtcttgtaggatggaattgccgaggcctagagaacctgagtgtagtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30042526 |
accgttaatgatgatactgtcatgtctttgttgaatattgttgaggggaatgagtcttataggatggaattgccgaggcctagagaacctgagtgtagtt |
30042427 |
T |
|
| Q |
216 |
cttaacctaaaatacctagtacctattataagtcggatgctctttttctcagtgagactttaatccatg |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30042426 |
cttaacctaaaatacctagtacctattataagtcggatgctctttttctcagtgagactttaatccatg |
30042358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 14861191 - 14861072
Alignment:
| Q |
164 |
aatgagtcttgtaggatggaattgccgaggcctagagaacctgagtgtagttcttaacctaaaatacctagtac-ctattataagtcggatgctcttttt |
262 |
Q |
| |
|
|||||||||| |||||||||| || ||||||||| |||||| || |||||| |||| ||| |||||||||| | ||||| ||||||||||| ||| ||| |
|
|
| T |
14861191 |
aatgagtcttataggatggaactgtcgaggcctaaggaacctaagcgtagtttttaaactataatacctagtccgctattttaagtcggatgttctattt |
14861092 |
T |
|
| Q |
263 |
ctcagtgagactttaatcca |
282 |
Q |
| |
|
| |||||||||||| |||| |
|
|
| T |
14861091 |
ttaagtgagactttagtcca |
14861072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 274
Target Start/End: Original strand, 21114454 - 21114554
Alignment:
| Q |
175 |
taggatggaattgccgaggcctagagaacctgagtgtagttcttaacctaaaatacctagtac-ctattataagtcggatgctctttttctcagtgagac |
273 |
Q |
| |
|
|||||||||| |||||||| || | |||| |||| ||||||| || ||||||||||||| | |||||||||| |||| || | |||||||||||||| |
|
|
| T |
21114454 |
taggatggaactgccgaggtctggggaacgtgagcgtagttccaaaattaaaatacctagttcgctattataagccggacgccttatttctcagtgagac |
21114553 |
T |
|
| Q |
274 |
t |
274 |
Q |
| |
|
| |
|
|
| T |
21114554 |
t |
21114554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University