View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_29 (Length: 294)
Name: NF3039_low_29
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 17 - 161
Target Start/End: Original strand, 39418760 - 39418904
Alignment:
| Q |
17 |
aggatttgaccattaacttgaatgtaatttaggtacattggattctttgtagctttgtgtaaccaagcagcaccccacaacaactcatcctaacaagtca |
116 |
Q |
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| T |
39418760 |
aggatttgaccattaacttgaatgtaatttaggtacattggattctttgtggctttgtgtaaccaagcagcaccccacaacaactcatcctaacaagtca |
39418859 |
T |
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| Q |
117 |
ttacaaacccatcagtcaaaagtactataattttgagtatgactc |
161 |
Q |
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| T |
39418860 |
ttacaaacccatcagtcaaaagtactataattttgagtatgactc |
39418904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 39418950 - 39419027
Alignment:
| Q |
207 |
ctttacctgataaccagagtaatcacagtaaaagggacacacaaagggttttaagacattgctgtaaggtcctctgtg |
284 |
Q |
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| T |
39418950 |
ctttacctgataaccagagtaatcccagtaaaagggacacacaaagggttttaagacattgctgtaaggtcctctgtg |
39419027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 26 - 106
Target Start/End: Complemental strand, 44511986 - 44511906
Alignment:
| Q |
26 |
ccattaacttgaatgtaatttaggtacattggattctttgtagctttgtgtaaccaagcagcaccccacaacaactcatcc |
106 |
Q |
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| T |
44511986 |
ccattaaccttaatgtagtttaagtacattaggttcttagtggccttgtgaagccaagcagcaccccacaacaactcatcc |
44511906 |
T |
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