View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_31 (Length: 290)
Name: NF3039_low_31
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 82 - 279
Target Start/End: Original strand, 45639165 - 45639362
Alignment:
| Q |
82 |
gatcgaagtatcagatgtgaattattataataattcattttcactatttcacttgtagagacacttgtttggacgcatcctacaacattaggcacgccac |
181 |
Q |
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| T |
45639165 |
gatcgaagtatcggatgtggattattatgataattcattttcactatttcacttgtagagacacttgtttggacgcatcctacaacattaggcacgccgc |
45639264 |
T |
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| Q |
182 |
catctcctcgtgcgagccacacttgctcatcgtggaagaacaaaattattgtgatagggggtatagatgagcgtgattcttatttgtctgacgttcat |
279 |
Q |
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| T |
45639265 |
catctcctcgtgcgagccacacttgctcatcgtggaagaacaaaattattgtgatagggggtatagacgagcgtgattcttatttgtctgacgttcat |
45639362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 86 - 275
Target Start/End: Complemental strand, 45601665 - 45601476
Alignment:
| Q |
86 |
gaagtatcagatgtgaattattataataattcattttcactatttcacttgtagagacacttgtttggacgcatcctacaacattaggcacgccaccatc |
185 |
Q |
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| T |
45601665 |
gaagtatcagacgtagattattctgataattcattttcgccgtttcacttatagagacacttgtttggatgcgtcctacaacatcaggcacgccaccatc |
45601566 |
T |
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| Q |
186 |
tcctcgtgcgagccacacttgctcatcgtggaagaacaaaattattgtgatagggggtatagatgagcgtgattcttatttgtctgacgt |
275 |
Q |
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| T |
45601565 |
tcctcgtgatagccactcatgctcgacgtggaagaacagaattattgtgatagggggtgaagacgggcatgattattatttgtctgacgt |
45601476 |
T |
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