View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_33 (Length: 288)
Name: NF3039_low_33
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 2 - 275
Target Start/End: Complemental strand, 35207284 - 35207011
Alignment:
| Q |
2 |
cccctgcaaatccatctctgcttcaaccctcttaacttccctaatcactctctcacaaaacatatgcacttttcaaccaaataccttccctactcaaaaa |
101 |
Q |
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| T |
35207284 |
cccctgcaaatccatctctgcttcaaccctcttaacttccctcatcactctctcacaaaacatatgcacttttcaaccaaataccttccctactcaaaaa |
35207185 |
T |
|
| Q |
102 |
ccatacgccagagaaacaaaacgccaaatccaaattcttctcatattcttccaataccttcaatcacataactctttcatccccaagccaatcattcccg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||| | |
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| T |
35207184 |
ccatacgccagagaaacaaaacgccaaatccaaattcttctcatattcttccaagaccttcaatcacataactctttcatcccccaaccaatcattcctg |
35207085 |
T |
|
| Q |
202 |
tcttctccgaacttcacttcacactacaaaaaattcacttcttattccaagattgttcaattcaaggcacaggt |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35207084 |
tcttctccgaacttcacttcacactacaaaaaattcacttcttattccaagattgttcaattcaaggcacaggt |
35207011 |
T |
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