View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_35 (Length: 278)
Name: NF3039_low_35
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 11 - 265
Target Start/End: Complemental strand, 43349224 - 43348970
Alignment:
| Q |
11 |
caaaggtacatatatattgaacttgcatgaatcaaagaaagtttctctataattttaatttacttttacatataagctcctcatagaataaaaacaattc |
110 |
Q |
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| T |
43349224 |
caaaggtacatatatattgaacttgcatgaatcaaagaaagtttctctataattttaatttacttttacatataagctcctcatagaataaaaacaattc |
43349125 |
T |
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| Q |
111 |
tatactactaattatatataattaacaagacaattttcttcttctaaaataaaagaaagcatgaataagcacgcttacccaaaagccaatagcatgatca |
210 |
Q |
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| T |
43349124 |
tatactactaattatatataattaacaagacaattttcttcttataaaataaaagaaaacatgaataagcactcttacccaaaagccaatagcatgatca |
43349025 |
T |
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| Q |
211 |
ccaacataatgatagaattagagtattcttcttcttggtttaccatgagaattgt |
265 |
Q |
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| T |
43349024 |
ccaacataatgatagaattagagtattcttcttcttggtttaccatgagaattgt |
43348970 |
T |
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