View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3039_low_39 (Length: 263)
Name: NF3039_low_39
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_39 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 45274394 - 45274646
Alignment:
| Q |
1 |
tatactctttcttcaatcataaggtacacaattaatcaaataaaatnnnnnnngctttgatagataataattgaattacgtaccgaaggtggcggtttgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274394 |
tatactctttcttcaatcataaggtatacaattaatcaaataaaataaaaaaagctttgatagataataattgaattacgtaccgaaggtggcggtttgc |
45274493 |
T |
|
| Q |
101 |
atggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggaacag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45274494 |
atggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggtacag |
45274593 |
T |
|
| Q |
201 |
tgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274594 |
tgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttg |
45274646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 45282637 - 45282887
Alignment:
| Q |
1 |
tatactctttcttcaatcataaggtacacaattaatcaaataaaatnnnnnnngctttgatagataataattgaattacgtaccgaaggtggcggtttgc |
100 |
Q |
| |
|
||||||||||||||| ||||||| || | ||||||| ||||||||| | |||||| ||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
45282637 |
tatactctttcttcattcataag-taaataattaattaaataaaataaaaaa-gttttgatcgatgataattgaattaagtaccgaaggtggcggtttgc |
45282734 |
T |
|
| Q |
101 |
atggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggaacag |
200 |
Q |
| |
|
||||||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
45282735 |
atggtcttgacaccagcagcaaagctctttctaccagtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacag |
45282834 |
T |
|
| Q |
201 |
tgatgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttg |
253 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| ||| ||||||||| |
|
|
| T |
45282835 |
tgatgtattcgtcatagacaccggccttaacgtagataacatatctgcctttg |
45282887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 45294030 - 45294275
Alignment:
| Q |
7 |
ctttcttcaatcataaggtacacaattaatcaaataaaatnnnnnnngctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtc |
106 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||||| | | |||| ||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45294030 |
ctttcttcattcataaggtacacaatttattaaataaaataaaaaa-gttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtc |
45294128 |
T |
|
| Q |
107 |
ttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggaacagtgatgt |
206 |
Q |
| |
|
||| ||| |||||| ||||||||| ||||| ||||||||| || | |||||||||||||||||||||||||||||||| || ||||||| |||||||| |
|
|
| T |
45294129 |
ttgacaccagcagcaccgttctttcttccggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgt |
45294228 |
T |
|
| Q |
207 |
attcgtcatagacaccagccttaacgtagataaaatacctgcctttg |
253 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| ||| ||||||||| |
|
|
| T |
45294229 |
attcatcatagacgccagccttaacgtagatagtatatctgcctttg |
45294275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 253
Target Start/End: Original strand, 45302990 - 45303235
Alignment:
| Q |
7 |
ctttcttcaatcataaggtacacaattaatcaaataaaatnnnnnnngctttgatagataataattgaattacgtaccgaaggtggcggtttgcatggtc |
106 |
Q |
| |
|
||||||||| ||||||||||||||||| || ||||||||| | | |||| ||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45302990 |
ctttcttcattcataaggtacacaatttattaaataaaataaaaaa-gttgtgatcgatgataattgaattacttaccgaaggtggcggtttgcatggtc |
45303088 |
T |
|
| Q |
107 |
ttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggaacagtgatgt |
206 |
Q |
| |
|
||| ||| |||||| ||||||||| ||||| ||||||||| || | |||||||||||||||||||||||||||||||| || ||||||| |||||||| |
|
|
| T |
45303089 |
ttgacaccagcagcaccgttctttcttccggtaacaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgt |
45303188 |
T |
|
| Q |
207 |
attcgtcatagacaccagccttaacgtagataaaatacctgcctttg |
253 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| ||| ||||||||| |
|
|
| T |
45303189 |
attcatcatagacgccagccttaacgtagatagtatatctgcctttg |
45303235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 45270867 - 45271113
Alignment:
| Q |
3 |
tactctttcttcaatcataaggtacacaattaatcaaataaaatnnnnnnngctttgatagataataattgaattacgtaccgaaggtggcggtttgcat |
102 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| ||||||||| |||||||| |||| ||| |||||||||||| |||||||| || | | |
|
|
| T |
45270867 |
tactctctcttcattcataaggtacacaattaattaaataaaataaaa---gctttgatcgata-taactgaattacgtacaaaaggtggcagtgttctg |
45270962 |
T |
|
| Q |
103 |
ggtcttggtaccggcagcaaagttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggaacagtg |
202 |
Q |
| |
|
|| ||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
45270963 |
tgtgttggtaccggccatttggttctttctaccagtgacaatggtctttgcagggccatcaccatacataagaatgttaacagcctccttggggacagtg |
45271062 |
T |
|
| Q |
203 |
atgtattcgtcatagacaccagccttaacgtagataaaatacctgcctttg |
253 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||| ||| ||||| |
|
|
| T |
45271063 |
atgtattcgtcatagacaccggccttaacgtagataacatatctgtctttg |
45271113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University