View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_4 (Length: 510)
Name: NF3039_low_4
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Original strand, 1178567 - 1179058
Alignment:
| Q |
18 |
gcaataaagttatctcttttctcataattgttgaatttattaaaggaactatagcatgatgctcttcagacgacagctcctcaccctgttccaatgagtg |
117 |
Q |
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| T |
1178567 |
gcaataaagttatctcttttctcataattgttgaatttattaaaggaactatagcatgatgctcttcagacgacagttcctcaccctgttccaatgagtg |
1178666 |
T |
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| Q |
118 |
catgcatgcaaaatagaaagtatataagcaataattttctctctccttcttttgacacgacaaaactgttttattttgttataattgtgatatagaaatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1178667 |
catgcatgcaaaatagaaagtatataagcaataattttttctctccttcttttgacacgacaaaactgttttattttgttataattgtgatatagaaatt |
1178766 |
T |
|
| Q |
218 |
taaacctctgaatgtgaaggtgacaaacacaatttaaattctacacacacaact----gctaggttccaagttaaaatccgataaaggtgtttggtctaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
1178767 |
taaacctctgaatgtgaaggtgacaaacacaatttaaattctacacacacaactgctagctaggttccaagttaaaacccgataaaggtgttcggtctaa |
1178866 |
T |
|
| Q |
314 |
taatatcgacattgccatttaaactaagctatactgacctattgactcatcgaatgttagaacataaacgacagcaaactaataaattttgaagcattac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1178867 |
taatatcgacattgccatttaaactaagctatactgacttattgattcatcgaatgttagaacataaacgacagcaaactaataaattttgaagcattac |
1178966 |
T |
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| Q |
414 |
ctcaggagacatgtggatttgcatatcttgttcatttcgcccttcatcgaattcattctctaaatcatcaatgtcatcttcctcttcatctc |
505 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1178967 |
ctcaggagacatggggatttgcatatcttgttcatttcgcccttcatcgaattcattctctaaatcatcaatgtcatcttcctcttcatctc |
1179058 |
T |
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