View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_41 (Length: 260)
Name: NF3039_low_41
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 28 - 214
Target Start/End: Original strand, 1738047 - 1738234
Alignment:
| Q |
28 |
tacactactagatctacatacttccattcatgaaattaccaatgactcatttctaaaagaaagctccttttatt-atttttgtttagtttgacttacata |
126 |
Q |
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| T |
1738047 |
tacactactagatctacatactgccattcatgaaattaccaatgactcatttctaaaagaaagctccttttatttatttttgtttagtttgacttacata |
1738146 |
T |
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| Q |
127 |
accaacatgagtgcacttattttattttttacaaacatgagtgcacttgaaacttcaacggcattattttagtgatggtgattgataa |
214 |
Q |
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| T |
1738147 |
accaacatgagtgcacttattttattttttacaaacatgagtgcacttgaaacttcaacggcattattttagtgatggagattgataa |
1738234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 1716637 - 1716829
Alignment:
| Q |
18 |
atgtcaatgatacactactagatctacatacttccattcatgaaattaccaatgactcatttctaaaagaaagctcctttta-ttatttttgtttagt-- |
114 |
Q |
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||||||| | |||||||||||||||||||| | |||||||||||||| || |||||||||||| ||| ||||||||||||| |||||||||| |||| |
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| T |
1716637 |
atgtcaagggtacactactagatctacatattgtcattcatgaaattatcattgactcatttctgaaataaagctccttttatttatttttgtatagtta |
1716736 |
T |
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| Q |
115 |
----------ttgacttacataaccaacatgagtgcacttattttattttttacaaacatgagtgcacttgaaacttcaacggcattatttta |
197 |
Q |
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| T |
1716737 |
ttattatagcttgccttacataaccaacatgattgcactttttatttttttttaaaacatgagtgcacttgaaacttcaacgacattatttta |
1716829 |
T |
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