View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_42 (Length: 254)
Name: NF3039_low_42
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 26570330 - 26570099
Alignment:
| Q |
18 |
aggaattgaaactggattcacagttgagggtgtaaaatacatggcttttaggaagaacatgaagaagcaaattcgaaaggcgttggtaaatttgaaaaca |
117 |
Q |
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| T |
26570330 |
aggaattgaaactggattcacagttgagggtgtaaaatacatggcttttaggaagaacatgaagaagcaaattcgaaaggcgttggtaaatttgaaaaca |
26570231 |
T |
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| Q |
118 |
atgaagaatgagttgattgattcttccacaaacaaagacaataactcttcacctatgtttgaattattaaatgaagcagaagcagtaaccctatgctcac |
217 |
Q |
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| T |
26570230 |
atgaagaatgagtcgattgattcttcctcaaacaaagacaataactcttcacctatgtttggattattgaaagaagcagaagcggtcactctttactcac |
26570131 |
T |
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| Q |
218 |
tagaacatctattgctatttatctctgctcct |
249 |
Q |
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| T |
26570130 |
tagaacatctattgctatttatctctgatcct |
26570099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 26567598 - 26567370
Alignment:
| Q |
18 |
aggaattgaaactggattcacagttgagggtgtaaaatacatggcttttaggaagaacatgaagaagcaaattcgaaaggcgttggtaaatttgaaaaca |
117 |
Q |
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|||| ||||||||||||| ||||||||||||||||||| ||||||| ||||||| || ||||||||||||| |||||| || |||| |||||| | |
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| T |
26567598 |
aggagttgaaactggattagcagttgagggtgtaaaatatttggctttaaggaagaccacaaagaagcaaattcaaaaggcctttctaaaattgaaagaa |
26567499 |
T |
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| Q |
118 |
atgaagaatgagttgattgattcttccacaaacaaa---gacaataactcttcacctatgtttgaattattaaatgaagcagaagcagtaaccctatgct |
214 |
Q |
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|||||| | |||||||||| ||| ||| ||||||| |||||||| |||||||||||| ||| ||| || || ||||||||| ||| || | ||| |
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| T |
26567498 |
atgaaggaggagttgattgcttcgtccttaaacaaaaaggacaataattcttcacctatgcttggattcttgaaaaaagcagaagaagtcactgtgagct |
26567399 |
T |
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| Q |
215 |
cactagaacatctattgctatttatctct |
243 |
Q |
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| T |
26567398 |
cactagagcatttgttgctatttatctct |
26567370 |
T |
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