View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_45 (Length: 251)
Name: NF3039_low_45
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_45 |
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Alignment Details
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 34 - 244
Target Start/End: Complemental strand, 1295149 - 1294941
Alignment:
| Q |
34 |
ctcttcttagttcttacgagtcttctaaaatactataaaataagaaaacattcattacttatttcttttcttaattttacattgtgaagtcatatgtatt |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1295149 |
ctcttcttagttcttacgagtcttctaaaatactataaaataagaaaacattcattacttattt-ttttcttaattttacattgtgaagtcatatgtatt |
1295051 |
T |
|
| Q |
134 |
acaaaaagattgatgagagaaacgtataaattaaaaatttcaannnnnnnnnngtttaaataaagaaaaatgctatagcaaggtatttttctattcttca |
233 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1295050 |
acaaaaagattgatgagagaaacgtataaattgaaattttc-attttttttttgtttaaataaagaaaaatgctatagcaaggtatttttctattcttca |
1294952 |
T |
|
| Q |
234 |
cgcctttgctt |
244 |
Q |
| |
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||||| ||||| |
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| T |
1294951 |
cgcctatgctt |
1294941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 6941522 - 6941671
Alignment:
| Q |
34 |
ctcttcttagttcttacgagtcttctaaaatactataaaataagaaaacattcattacttatttctt-ttcttaattttacattgtgaagtcatatgtat |
132 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || |||||||||||||||||||||||||||||||| |
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| T |
6941522 |
ctcttctaagttcttacgagtcttctaaaatactataaaataagaaaacattcatttctttttttttcttcttaattttacattgtgaagtcatatgtat |
6941621 |
T |
|
| Q |
133 |
ta---------caaaaagattgatgagagaaacgtataaattaaaaattt |
173 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||| |
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| T |
6941622 |
tacaaaaagatcaaaaagattgatgagagaaacgtataaattaaaaattt |
6941671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 173
Target Start/End: Complemental strand, 5720950 - 5720803
Alignment:
| Q |
34 |
ctcttcttagttcttacgagtcttctaaaatactataaaataagaaaacattcattacttatttcttttcttaattttacattgtgaagtcatatgtatt |
133 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
5720950 |
ctcttctaagttcttacgagtcttctaaaatactataaaataagaaaccattcatttctt-ttttttttcttaattttacattgtgaagtcatatgtatt |
5720852 |
T |
|
| Q |
134 |
a---------caaaaagattgatgagagaaacgtataaattaaaaattt |
173 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5720851 |
acaaaaagatcaaaaagattgatgagagaaacgtataaattaaaaattt |
5720803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 26383513 - 26383379
Alignment:
| Q |
34 |
ctcttcttagttcttacgagtcttctaaaatactataaaataagaaaacattcattacttatttcttttcttaattttacattgtgaagtcatatgtatt |
133 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||| ||||||||||||||| ||| ||| | |||||||||||||||||||||| |||||||||| |
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| T |
26383513 |
ctcttctaagtttttacgagttttctaaaatactataaaagaagaaaacattcatttctttttt-tcttcttaattttacattgtgaagccatatgtatt |
26383415 |
T |
|
| Q |
134 |
acaaaaagattgatgagagaaacgtataaattaaaa |
169 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |
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|
| T |
26383414 |
acaaaaagattgatgagagaaacatataaattaaaa |
26383379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 173
Target Start/End: Original strand, 38650006 - 38650153
Alignment:
| Q |
34 |
ctcttcttagttcttacgagtcttctaaaatactataaaataagaaaacattcattacttatttcttttcttaattttacattgtgaagtcatatgtatt |
133 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| | |||||||||||||||||||||||||||||||| |
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| T |
38650006 |
ctcttctaagttcttacgagtcttctaaaatactataaaataagaaaacattcattttttttttc-tctcttaattttacattgtgaagtcatatgtatt |
38650104 |
T |
|
| Q |
134 |
a---------caaaaagattgatgagagaaacgtataaattaaaaattt |
173 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38650105 |
acaaaaagatcaaaaagattgatgagagaaacgtataaattaaaaattt |
38650153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 18305560 - 18305417
Alignment:
| Q |
34 |
ctcttcttagttcttacgagtcttctaaaatactataaaataagaaaacattcattacttatttcttttcttaattttacattgtgaagtcatatgtatt |
133 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
18305560 |
ctcttctaagttcttacgagtcttctaaaatactataaaataagaaaccattcatttctt-ttttttttcttaattttacattgtgaagtcatatgtatt |
18305462 |
T |
|
| Q |
134 |
a---------caaaaagattgatgagagaaacgtataaattaaaa |
169 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||| |
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| T |
18305461 |
acaaaaagatcaaaaagattgatgagagaaacgtataaattaaaa |
18305417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 37892194 - 37892152
Alignment:
| Q |
131 |
attacaaaaagattgatgagagaaacgtataaattaaaaattt |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37892194 |
attacaaaaagattgatgagagaaacgtataaattaaaaattt |
37892152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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