View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_46 (Length: 249)
Name: NF3039_low_46
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_46 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 30190442 - 30190204
Alignment:
| Q |
1 |
cttggcaaattatgtctattattaatccattccccttggccatttaataaatgaacnnnnnnncaagtactttcactattcaaattgcggtgctatcttt |
100 |
Q |
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| T |
30190442 |
cttggcaaattatgtcttttattaatccattccccttggccatttaataaatgaactttttttcaagtactttcactattcaaattgcggtgctatcttt |
30190343 |
T |
|
| Q |
101 |
taacgttttcgttcacatttcatttcgtttttatcatagctctaatattgaaatttgggaacatatatagtactatgttaactaatgacacgacaaagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30190342 |
taacgttttcgttcacatttcatttcgtttttatcatagctctaatattgaaatttgggaacatatatagtactatgttaactaatgacacgacaaagac |
30190243 |
T |
|
| Q |
201 |
taatcaaaccacgtagcactttctttccttcttcctatg |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
30190242 |
taatcaaaccacgtagcactttctttccttcttcctatg |
30190204 |
T |
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