View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_5 (Length: 509)
Name: NF3039_low_5
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 2528530 - 2528838
Alignment:
| Q |
11 |
cagagaacaaatcagacaggaaaatgaaacaaaacaaacatgtcagacaaaaaattcattcaatcaagctggtaaaatatttatgaaattaaaaatcatc |
110 |
Q |
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| T |
2528530 |
cagagaacaaatcagacaggaaaatgaaacaaaacaaacatgtcagacaaaaaattgattcaatcaagctggtaaaatatttatgaaattaaaaatcatc |
2528629 |
T |
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| Q |
111 |
atgtttctcatagagaaattaacaaaattcttccatttctctgcatatacatacaaaagcaaaattcagaaaactgatcccttgcatgcaggctcaaaga |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2528630 |
atgtttctcatagagaaattaacaaaattcttccatttctctgcatatacatacaaaagcaaaattcagaaaactgatcccttgcatgcaggctcagaga |
2528729 |
T |
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| Q |
211 |
cactcacaaatctcaactgaattccaattgtgaaatcctaaaccctacattcaaaaaccacaaaagaccctttgaaatttctacaccaaaacccctttga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2528730 |
cactcacaaatctcaactgaattccaattgtgaaatcctaaaccctacattcaaaaaccacaaaagaccctttgaaatttctacaccaaaacccctttga |
2528829 |
T |
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| Q |
311 |
tttgaacaa |
319 |
Q |
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||||||||| |
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| T |
2528830 |
tttgaacaa |
2528838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 404 - 492
Target Start/End: Original strand, 2528920 - 2529008
Alignment:
| Q |
404 |
cccatttgaaatattcatgcaaccaattttgtgacattgttgaaacacaagaaaacatcatcataacaaaagggtgagtgagatcaaac |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2528920 |
cccatttgaaatattcatgcaaccaattttgtgacattgttgaaacacaagaaaacatcatcataacaaaagggtgagtgagatcaaac |
2529008 |
T |
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