View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_50 (Length: 247)
Name: NF3039_low_50
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 4551187 - 4551267
Alignment:
| Q |
19 |
ataaaaccaaaggacaaaaaataaagacatgaaaactgtgaaacagtatatacaatatacctgaggttaaagagagtgtgt |
99 |
Q |
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| T |
4551187 |
ataaaaccaaaggacaaaagataaaaacatgaaaactgtgaaacagtatatacaatatacctgaggttaaagagagtgtgt |
4551267 |
T |
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Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 4551331 - 4551399
Alignment:
| Q |
163 |
tgcctagtgttgttgaagacatagttaaaggagaagaacacaagtttgtgttatgcaatgatatgcttt |
231 |
Q |
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| T |
4551331 |
tgcctagtgttgttgaagacatagttaaaggagaagaacacaagtttgtgttatgcaatgatatgcttt |
4551399 |
T |
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