View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_51 (Length: 244)
Name: NF3039_low_51
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 26570558 - 26570421
Alignment:
| Q |
101 |
ggtatgcaacaaacttaatggaatgcaggatttgcatgactgcattgataagttacttcaattgccaactgaacaacaagctttatcacgagaatgcaat |
200 |
Q |
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| T |
26570558 |
ggtatgcaacaaacttaatggaatgcaggatttgaatgactgcattggtaagttacttcaattgccaactgaacaacaagccttatcacgagaatgcaat |
26570459 |
T |
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| Q |
201 |
gaaaaatcagttaatgacctactagaaggttcacttag |
238 |
Q |
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| T |
26570458 |
gaaagatcggttaatgacctactagaaggttcacttag |
26570421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 238
Target Start/End: Complemental strand, 26567826 - 26567689
Alignment:
| Q |
101 |
ggtatgcaacaaacttaatggaatgcaggatttgcatgactgcattgataagttacttcaattgccaactgaacaacaagctttatcacgagaatgcaat |
200 |
Q |
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| T |
26567826 |
ggtatgcaacaaccttaatggcatgcaggatttgcatgactgcatcgataagttccttcaaatgccaattgaacaacaagccttatcacaggaatgcaat |
26567727 |
T |
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| Q |
201 |
gaaaaatcagttaatgacctactagaaggttcacttag |
238 |
Q |
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| T |
26567726 |
gaaaaatgtgtcgatgacctactagaaagttctcttag |
26567689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 26570635 - 26570576
Alignment:
| Q |
18 |
cctcttgtatcacaatttgaggacaatttgaaaatattgaaaaattctgaaggcaccact |
77 |
Q |
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| T |
26570635 |
cctcttgtatcacaatttgaggacaatttgaaaatattgaataattctgaaggcaccact |
26570576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 44690710 - 44690581
Alignment:
| Q |
101 |
ggtatgcaacaaacttaatggaatgcaggat---ttgcatgactgcattgataagttacttcaattgccaactgaacaacaagctttatcacgagaatgc |
197 |
Q |
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|||||||||||||||||| || ||||||||| |||| ||||||||| |||||||| |||||||| |||| |||||||||||| ||| ||| | | ||| |
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| T |
44690710 |
ggtatgcaacaaacttaacggtatgcaggataatttgcttgactgcatcgataagttccttcaatttccaattgaacaacaagccttagcacaaaagtgc |
44690611 |
T |
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| Q |
198 |
aatgaaaaatcagttaatgacctactagaa |
227 |
Q |
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| T |
44690610 |
aatgaaaaatgtgttgatgacatactagaa |
44690581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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