View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_52 (Length: 240)
Name: NF3039_low_52
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_52 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 43349576 - 43349335
Alignment:
| Q |
1 |
gccacaacagtagtggttactttggagatagttacttgcattttttaggttgaatttttcatatttaaaa--gagtccatcccagctacccaacaaacaa |
98 |
Q |
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| T |
43349576 |
gccacaacagtagtggttactttggagatagttacttgcattttttaggttgaatttttcatatttaaaacagagtccatcccagctacccaacaaacaa |
43349477 |
T |
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| Q |
99 |
gttgaaccatcttttctaaggactttgacaaatacaatttcaacatttataattattacttatcccaagcctataggaactaataatcaattattattag |
198 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43349476 |
gttgaaccatcttttctaaggactttgacaaaaacaatttcaacatttataattattacttatcccaagcctataggaactaataatcaattattattag |
43349377 |
T |
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| Q |
199 |
caaaagaaattattcttaatcaaagaaaaacaataccaaata |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43349376 |
caaaagaaattattcttaatcaaagaaaaacaataccaaata |
43349335 |
T |
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