View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3039_low_54 (Length: 240)

Name: NF3039_low_54
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3039_low_54
NF3039_low_54
[»] chr4 (15 HSPs)
chr4 (19-240)||(54630412-54630633)
chr4 (63-240)||(54860730-54860906)
chr4 (133-240)||(52982900-52983007)
chr4 (133-240)||(55619024-55619130)
chr4 (133-240)||(55626328-55626434)
chr4 (133-240)||(55657373-55657480)
chr4 (137-240)||(3671074-3671177)
chr4 (61-122)||(54860404-54860465)
chr4 (62-117)||(54860619-54860674)
chr4 (136-230)||(55637318-55637412)
chr4 (150-240)||(55663621-55663711)
chr4 (61-122)||(54860516-54860577)
chr4 (138-240)||(50190005-50190107)
chr4 (68-122)||(54860299-54860353)
chr4 (62-95)||(55637743-55637776)
[»] chr2 (1 HSPs)
chr2 (133-240)||(13403715-13403822)
[»] chr8 (1 HSPs)
chr8 (137-240)||(9891606-9891709)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 54630633 - 54630412
Alignment:
Q  19 attactcctcctagtatatacttattcctctatacaataaatcgtcatgggtccttgctgctgcaacatactttctcccccaacgaaatatcactagaca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54630633 attactcctcctagtatatacttattcctctatacaataaatcgtcatgggtccttgctgctgcaacatactttctcccccaacgaaatatcactagaca 54630534  T
Q  119 agacaccatgaagttagtgtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctttgtcttcatgactatcca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54630533 agacaccatgaagttagtgtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctctgtcttcatgactatcca 54630434  T
Q  219 agttttcaatcttttccaatcc 240  Q
    ||||||||||||||||||||||    
T  54630433 agttttcaatcttttccaatcc 54630412  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 63 - 240
Target Start/End: Original strand, 54860730 - 54860906
Alignment:
Q  63 tcatgggtccttgctgctgcaacatactttctcccccaacgaaatatcactagacaagacaccatgaagttagtgtctcatcttcatcttccaaccaata 162  Q
    |||| |||||| |||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  54860730 tcattggtcctagctgctgcaacatactttctcccc-agtgaaatatcactagaccagacaccatgaagttagtgtctcgtcttcatcttccaaccaata 54860828  T
Q  163 tctctcgagaattttagcagccttctcataaatttctttgtcttcatgactatccaagttttcaatcttttccaatcc 240  Q
    | |||| ||||||||| ||||||||||||||||||| | ||  |||||| | | || ||| |||||||||||||||||    
T  54860829 tgtctcaagaattttaacagccttctcataaatttcatagttgtcatgattctgcatgttatcaatcttttccaatcc 54860906  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 52982900 - 52983007
Alignment:
Q  133 tagtgtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctttgtcttcatgactatccaagttttcaatcttt 232  Q
    ||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||||||||| ||||  |||||||| | ||||||||||||||||    
T  52982900 tagtgtctcatcttcatcttccaaccaatatgtctcgagaattctaacagcattctcataaatttcattgttgtcatgactctgcaagttttcaatcttt 52982999  T
Q  233 tccaatcc 240  Q
    ||||||||    
T  52983000 tccaatcc 52983007  T

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Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 55619024 - 55619130
Alignment:
Q  133 tagtgtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctttgtcttcatgactatccaagttttcaatcttt 232  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  |||||||| | ||||||||| || |||    
T  55619024 tagtgtctcatctacatcttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgactctgcaagttttcgat-ttt 55619122  T
Q  233 tccaatcc 240  Q
    ||||||||    
T  55619123 tccaatcc 55619130  T

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Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 55626328 - 55626434
Alignment:
Q  133 tagtgtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctttgtcttcatgactatccaagttttcaatcttt 232  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||  |||||||| | ||||||||| || |||    
T  55626328 tagtgtctcatctacatcttccaaccaatatgtctcgagaattttaacagccttctcataaatttctttgttgtcatgactctgcaagttttcgat-ttt 55626426  T
Q  233 tccaatcc 240  Q
    ||||||||    
T  55626427 tccaatcc 55626434  T

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Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 133 - 240
Target Start/End: Original strand, 55657373 - 55657480
Alignment:
Q  133 tagtgtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctttgtcttcatgactatccaagttttcaatcttt 232  Q
    ||||||||||||  ||||||||||||||||| |||| ||||||||| ||||||||||||||||||| ||||  |||||||| | ||||||||| ||||||    
T  55657373 tagtgtctcatcaacatcttccaaccaatatgtctcaagaattttaacagccttctcataaatttcattgttgtcatgactctgcaagttttcgatcttt 55657472  T
Q  233 tccaatcc 240  Q
    ||||||||    
T  55657473 tccaatcc 55657480  T

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Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 137 - 240
Target Start/End: Original strand, 3671074 - 3671177
Alignment:
Q  137 gtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctttgtcttcatgactatccaagttttcaatcttttcca 236  Q
    |||||| |||||||||||||||||||| |||| ||||||||  ||||||||||||||||||| | ||  |||||||| | ||||||| ||||||||||||    
T  3671074 gtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttctcataaatttcatagttgtcatgactctgcaagtttccaatcttttcca 3671173  T
Q  237 atcc 240  Q
    ||||    
T  3671174 atcc 3671177  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 54860404 - 54860465
Alignment:
Q  61 cgtcatgggtccttgctgctgcaacatactttctcccccaacgaaatatcactagacaagac 122  Q
    |||||||||||||||||||||| ||||||||||||||||  | |||||||||||||| ||||    
T  54860404 cgtcatgggtccttgctgctgcgacatactttctcccccggcaaaatatcactagaccagac 54860465  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 62 - 117
Target Start/End: Original strand, 54860619 - 54860674
Alignment:
Q  62 gtcatgggtccttgctgctgcaacatactttctcccccaacgaaatatcactagac 117  Q
    ||||||||||||| ||||||||||||||||||||||||  | ||||||||||||||    
T  54860619 gtcatgggtccttactgctgcaacatactttctcccccggcaaaatatcactagac 54860674  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 136 - 230
Target Start/End: Complemental strand, 55637412 - 55637318
Alignment:
Q  136 tgtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctttgtcttcatgactatccaagttttcaatct 230  Q
    |||||| ||||||||||  ||||||||| | || ||||||||| |||||||||||  |||||| ||||  |||||||| | ||||||||||||||    
T  55637412 tgtctcgtcttcatctttaaaccaatatgtttcaagaattttaacagccttctcacgaatttcattgttgtcatgactctgcaagttttcaatct 55637318  T

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Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 240
Target Start/End: Original strand, 55663621 - 55663711
Alignment:
Q  150 cttccaaccaatatctctcgagaattttagcagccttctcataaatttctttgtcttcatgactatccaagttttcaatcttttccaatcc 240  Q
    |||||||||||||| ||||||  ||| || |||||||||||||||||||  |||  |  ||||| | ||||||||||||||||||||||||    
T  55663621 cttccaaccaatatgtctcgacgattctaacagccttctcataaatttcaatgtggttgtgactctgcaagttttcaatcttttccaatcc 55663711  T

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Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 54860516 - 54860577
Alignment:
Q  61 cgtcatgggtccttgctgctgcaacatactttctcccccaacgaaatatcactagacaagac 122  Q
    |||||||||||||||||||||| ||||||||||| ||||  | |||||||||||||| ||||    
T  54860516 cgtcatgggtccttgctgctgcgacatactttctaccccggcaaaatatcactagaccagac 54860577  T

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Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 50190005 - 50190107
Alignment:
Q  138 tctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctttgtcttcatgactatccaagttttcaatcttttccaa 237  Q
    ||||||||||||| | | |||||||| | || ||||||||| ||||||||||||| ||||||| ||  |||||||| | || |||||| ||||| || ||    
T  50190005 tctcatcttcatcgttcgaccaatatgtttcaagaattttaacagccttctcatatatttcttggttatcatgactttgcaggttttctatcttgtcaaa 50190104  T
Q  238 tcc 240  Q
    |||    
T  50190105 tcc 50190107  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 122
Target Start/End: Original strand, 54860299 - 54860353
Alignment:
Q  68 ggtccttgctgctgcaacatactttctcccccaacgaaatatcactagacaagac 122  Q
    ||||||||||| |||||||||||||||||||   | |||||||||||||| ||||    
T  54860299 ggtccttgctggtgcaacatactttctcccctggcaaaatatcactagaccagac 54860353  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 95
Target Start/End: Complemental strand, 55637776 - 55637743
Alignment:
Q  62 gtcatgggtccttgctgctgcaacatactttctc 95  Q
    |||||||||||||||||||||| |||||||||||    
T  55637776 gtcatgggtccttgctgctgcagcatactttctc 55637743  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 13403822 - 13403715
Alignment:
Q  133 tagtgtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctttgtcttcatgactatccaagttttcaatcttt 232  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| ||||  |||||||| | || ||| |||||||||    
T  13403822 tagtgtctcgtcttcatcttccaaccaatatgtctcgagaattttaacagccttctcgtaaatttcattgttgtcatgactctgcaggttctcaatcttt 13403723  T
Q  233 tccaatcc 240  Q
    ||||||||    
T  13403722 tccaatcc 13403715  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 137 - 240
Target Start/End: Complemental strand, 9891709 - 9891606
Alignment:
Q  137 gtctcatcttcatcttccaaccaatatctctcgagaattttagcagccttctcataaatttctttgtcttcatgactatccaagttttcaatcttttcca 236  Q
    |||||| |||||||||||||||||||| |||| ||||||||  |||||||| |||||||||| | ||  |||||||| | ||||||||||||||||||||    
T  9891709 gtctcaccttcatcttccaaccaatatgtctcaagaattttgacagccttcccataaatttcatagttgtcatgactctgcaagttttcaatcttttcca 9891610  T
Q  237 atcc 240  Q
    ||||    
T  9891609 atcc 9891606  T

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