View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_56 (Length: 239)
Name: NF3039_low_56
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 45109273 - 45109055
Alignment:
| Q |
1 |
catatcaagagtgcagcaaacatgagtacaaaaataagctccatagctgaaacaattccaattggagacataaccaggaatggacgtctcaggaagccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45109273 |
catatcaagagtgcagcaaacatgagtacaaaaataagctccatagctgaaacaattccaattggagacataaccaggaatggacgtctcaggaagccta |
45109174 |
T |
|
| Q |
101 |
aacatctctttagagcgccgctgctggaaccaaaacatatatatctatgacttctaaagagaaactaaagaatactccatgtctagataattaattaaaa |
200 |
Q |
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||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45109173 |
aacatctctttagagcgccgccgctggaaccaaaacttatatatctatgacttctaaagggaaactaaagaatactccatgtctagataattaattaaaa |
45109074 |
T |
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| Q |
201 |
attcgagtaattaaggata |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
45109073 |
attcgagtaattaaggata |
45109055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 45126258 - 45126116
Alignment:
| Q |
1 |
catatcaagagtgcagcaaacatgagtacaaaaataagctccatagctgaaacaattccaattggagacataaccaggaatggacgtctcaggaagccta |
100 |
Q |
| |
|
|||||||| |||||| ||||||||| | |||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||| | || |
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| T |
45126258 |
catatcaaaagtgcaacaaacatgattgcaaaaataagctccatagctgaaacaattccaattgtaggcatcaccaggaatggacgtctcaggaaacata |
45126159 |
T |
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| Q |
101 |
aacatctctttagagcgccgctgctggaaccaaaacatatata |
143 |
Q |
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||||| | ||||||||||| | ||| ||| |||||||||||| |
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| T |
45126158 |
aacatttttttagagcgccagtactgaaacaaaaacatatata |
45126116 |
T |
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