View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_62 (Length: 235)
Name: NF3039_low_62
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_62 |
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Alignment Details
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 52697903 - 52697812
Alignment:
| Q |
1 |
atcctccagttgttcgtttatcagcaatcctaccatgcctatccacacgatcattgctcaccaagctattcaaatccatttcctcctgtttc |
92 |
Q |
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| T |
52697903 |
atcctccagttgttcgtttatcagcaatcctaccatgcctatccacacgatcattactcaccaagctattcaaatccatttcctcctgtttc |
52697812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 52720453 - 52720363
Alignment:
| Q |
1 |
atcctccagttgttcgtttatcagcaatcctaccatgcctatccacacgatcattgctcaccaagctattcaaatccatttcctcctgttt |
91 |
Q |
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| T |
52720453 |
atcctccagttgttcttttatcagcaatcctaccatgccgatccacgcggccattgcttaccaagctactcgattccatttcctcctgttt |
52720363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 52711563 - 52711473
Alignment:
| Q |
1 |
atcctccagttgttcgtttatcagcaatcctaccatgcctatccacacgatcattgctcaccaagctattcaaatccatttcctcctgttt |
91 |
Q |
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||||||| ||||||| ||||| |||||||||||| |||| ||||||||| ||||||| ||||||||| || | ||||||||||||||||| |
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| T |
52711563 |
atcctccggttgttcttttattagcaatcctaccttgccgatccacacggccattgcttaccaagctactcgattccatttcctcctgttt |
52711473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 52697746 - 52697695
Alignment:
| Q |
158 |
gacatatcaaattgaatactgtactgtttaatttatttgtctataaatcatctcaag |
214 |
Q |
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| T |
52697746 |
gacatatcaaattgaatactgt-----ttaatttatttgtctataaatcatctcaag |
52697695 |
T |
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