View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3039_low_65 (Length: 226)
Name: NF3039_low_65
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3039_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 186
Target Start/End: Original strand, 9736139 - 9736311
Alignment:
| Q |
14 |
cacagattgagcagagattttactgggtgacaatcctctaatgtgatatttgtgatgcatatgatacattttatttgacacaacttcaacatttcctaca |
113 |
Q |
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| T |
9736139 |
cacagatggagcagagattttactgggtgacaatcctctaatgtgatatttgtgatgcatatgatacattttatttgacacaacttcaacatttccaatc |
9736238 |
T |
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| Q |
114 |
agagcactttataagtatacccttattcagtaatacttagtagccttattagcttgaaaatttaaagtgttca |
186 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9736239 |
agagcactttataagtatacccttattcagtaatacttagtagccttattagcttgaaaatttaaagtattca |
9736311 |
T |
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