View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3039_low_71 (Length: 206)

Name: NF3039_low_71
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3039_low_71
NF3039_low_71
[»] chr4 (16 HSPs)
chr4 (4-206)||(54630232-54630434)
chr4 (101-206)||(52982985-52983090)
chr4 (94-206)||(55657458-55657570)
chr4 (101-200)||(54860890-54860989)
chr4 (94-206)||(55663689-55663801)
chr4 (94-194)||(55619120-55619220)
chr4 (94-194)||(55626424-55626524)
chr4 (94-194)||(54630214-54630314)
chr4 (4-86)||(55657470-55657552)
chr4 (13-86)||(54860896-54860969)
chr4 (94-206)||(3671155-3671267)
chr4 (26-86)||(55663701-55663761)
chr4 (4-87)||(55619119-55619202)
chr4 (4-87)||(55626423-55626506)
chr4 (94-171)||(55637218-55637295)
chr4 (26-86)||(52982997-52983057)
[»] chr8 (4 HSPs)
chr8 (101-200)||(17220158-17220257)
chr8 (100-206)||(9891522-9891628)
chr8 (4-86)||(17220169-17220251)
chr8 (29-86)||(9891559-9891616)
[»] chr2 (2 HSPs)
chr2 (101-200)||(13403632-13403731)
chr2 (4-86)||(13403643-13403725)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 206
Target Start/End: Original strand, 54630232 - 54630434
Alignment:
Q  4 ggaggagcagagaaaagcataagtaacactggagatgtcaacttgtatgctcagacgataaaggatgttgagggattggaaaaaggtttggagaaatttc 103  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54630232 ggagaagcagagaaaagcataagtaacaccggagatgtcaacttgtatgctcagacgataaaggatgttgagggattggaaaaaggtttggagaaatttc 54630331  T
Q  104 tgaaggttggagacgcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaaagattgaaaa 203  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54630332 tgaaggttggagaagcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaaagattgaaaa 54630431  T
Q  204 ctt 206  Q
    |||    
T  54630432 ctt 54630434  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 52983090 - 52982985
Alignment:
Q  101 ttctgaaggttggagacgcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaaagattga 200  Q
    |||||||||||||||| || |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  52983090 ttctgaaggttggagaagcggagaaaaggttttgtaacacgagagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaagattga 52982991  T
Q  201 aaactt 206  Q
    ||||||    
T  52982990 aaactt 52982985  T

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Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 55657570 - 55657458
Alignment:
Q  94 gagaaatttctgaaggttggagacgcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaa 193  Q
    ||||| ||||| ||||||||||| || |||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||    
T  55657570 gagaattttctaaaggttggagaagcggagaaaagcttttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaa 55657471  T
Q  194 agattgaaaactt 206  Q
    |||| ||||||||    
T  55657470 agatcgaaaactt 55657458  T

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Target: chr4; HSP #4
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 54860989 - 54860890
Alignment:
Q  101 ttctgaaggttggagacgcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaaagattga 200  Q
    |||||||||||||||| |  |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||    
T  54860989 ttctgaaggttggagaagtggagaaaagctttggtaacacgggagatgtcaacttgtatgctcagatgatagaggatgctgagggattggaaaagattga 54860890  T

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Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 55663801 - 55663689
Alignment:
Q  94 gagaaatttctgaaggttggagacgcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaa 193  Q
    ||||| |||||| |||||||||| || |||||||  ||| ||||||| ||||||||||| |||||||||||||||||||| |||||| ||||||||||||    
T  55663801 gagaattttctggaggttggagaagcggagaaaaacttttgtaacaccggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaa 55663702  T
Q  194 agattgaaaactt 206  Q
    |||||||||||||    
T  55663701 agattgaaaactt 55663689  T

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Target: chr4; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 55619220 - 55619120
Alignment:
Q  94 gagaaatttctgaaggttggagacgcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaa 193  Q
    ||||| ||||| ||||||||||| || |||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||    
T  55619220 gagaattttctaaaggttggagaagcggagaaaagcttttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaa 55619121  T
Q  194 a 194  Q
    |    
T  55619120 a 55619120  T

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Target: chr4; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 94 - 194
Target Start/End: Complemental strand, 55626524 - 55626424
Alignment:
Q  94 gagaaatttctgaaggttggagacgcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaa 193  Q
    ||||| ||||| ||||||||||| || |||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |||| | ||||||||||||    
T  55626524 gagaattttctaaaggttggagaagcggagaaaagcttttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaa 55626425  T
Q  194 a 194  Q
    |    
T  55626424 a 55626424  T

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Target: chr4; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 94 - 194
Target Start/End: Original strand, 54630214 - 54630314
Alignment:
Q  94 gagaaatttctgaaggttggagacgcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaa 193  Q
    ||||| ||||| ||||||||||| |||||||||||  |  ||||||| ||||||||||| ||||||||||||| |||| |||||||| ||||||||||||    
T  54630214 gagaattttctaaaggttggagaagcagagaaaagcataagtaacaccggagatgtcaacttgtatgctcagacgataaaggatgttgagggattggaaa 54630313  T
Q  194 a 194  Q
    |    
T  54630314 a 54630314  T

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Target: chr4; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 55657552 - 55657470
Alignment:
Q  4 ggaggagcagagaaaagcataagtaacactggagatgtcaacttgtatgctcagacgataaaggatgttgagggattggaaaa 86  Q
    |||| ||| ||||||||| |  ||||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||||||    
T  55657552 ggagaagcggagaaaagcttttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaa 55657470  T

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Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 54860969 - 54860896
Alignment:
Q  13 gagaaaagcataagtaacactggagatgtcaacttgtatgctcagacgataaaggatgttgagggattggaaaa 86  Q
    ||||||||| |  ||||||| ||||||||||||||||||||||||| |||| |||||| |||||||||||||||    
T  54860969 gagaaaagctttggtaacacgggagatgtcaacttgtatgctcagatgatagaggatgctgagggattggaaaa 54860896  T

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Target: chr4; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 3671267 - 3671155
Alignment:
Q  94 gagaaatttctgaaggttggagacgcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaa 193  Q
    ||||| ||||||||||||||||| || |||||||     ||| |||||||||||||||| |||||||||| |||||||| ||| |   ||||||||||||    
T  3671267 gagaattttctgaaggttggagaagcggagaaaaaccccggttacacgggagatgtcaacttgtatgctctgatgataggggacgcggagggattggaaa 3671168  T
Q  194 agattgaaaactt 206  Q
    |||||| ||||||    
T  3671167 agattggaaactt 3671155  T

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Target: chr4; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 55663761 - 55663701
Alignment:
Q  26 gtaacactggagatgtcaacttgtatgctcagacgataaaggatgttgagggattggaaaa 86  Q
    ||||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||||||    
T  55663761 gtaacaccggagatgtcaacttgtatgctcagatgatagatgatgttgagggattggaaaa 55663701  T

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Target: chr4; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 55619202 - 55619119
Alignment:
Q  4 ggaggagcagagaaaagcataagtaacactggagatgtcaacttgtatgctcagacgataaaggatgttgagggattggaaaaa 87  Q
    |||| ||| ||||||||| |  ||||||| ||||||||||||||||||||||||| |||| | |||| ||||||||||||||||    
T  55619202 ggagaagcggagaaaagcttttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaaa 55619119  T

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Target: chr4; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 55626506 - 55626423
Alignment:
Q  4 ggaggagcagagaaaagcataagtaacactggagatgtcaacttgtatgctcagacgataaaggatgttgagggattggaaaaa 87  Q
    |||| ||| ||||||||| |  ||||||| ||||||||||||||||||||||||| |||| | |||| ||||||||||||||||    
T  55626506 ggagaagcggagaaaagcttttgtaacacgggagatgtcaacttgtatgctcagatgatagatgatgctgagggattggaaaaa 55626423  T

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Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 94 - 171
Target Start/End: Original strand, 55637218 - 55637295
Alignment:
Q  94 gagaaatttctgaaggttggagacgcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgata 171  Q
    ||||| ||||||||||||||||| || || ||||| | ||| ||||||||||||||||| ||||||| ||||||||||    
T  55637218 gagaattttctgaaggttggagaagccgataaaagctatggaaacacgggagatgtcaacttgtatgttcagatgata 55637295  T

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Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 52983057 - 52982997
Alignment:
Q  26 gtaacactggagatgtcaacttgtatgctcagacgataaaggatgttgagggattggaaaa 86  Q
    |||||||  |||||||||| ||||||||||||| |||| |||||| |||||||||||||||    
T  52983057 gtaacacgagagatgtcaatttgtatgctcagatgatagaggatgctgagggattggaaaa 52982997  T

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Target: chr8 (Bit Score: 68; Significance: 1e-30; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 17220158 - 17220257
Alignment:
Q  101 ttctgaaggttggagacgcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaaagattga 200  Q
    |||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||| | |||||||||||||||||||    
T  17220158 ttctgaaggttggagaagcggagaaaagctttggtaacacgggagatgtcaacttgtatgctcaaatgatagaagatgctgagggattggaaaagattga 17220257  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 9891522 - 9891628
Alignment:
Q  100 tttctgaaggttggagacgcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaaagattg 199  Q
    ||||||||||||||||| || | |||||     ||| |||| ||||||||||| |||||||||| |||||||||||| | | ||||||||||||||||||    
T  9891522 tttctgaaggttggagaagcggggaaaaaccccggttacacaggagatgtcaacttgtatgctctgatgatagaggacgctgagggattggaaaagattg 9891621  T
Q  200 aaaactt 206  Q
    |||||||    
T  9891622 aaaactt 9891628  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 17220169 - 17220251
Alignment:
Q  4 ggaggagcagagaaaagcataagtaacactggagatgtcaacttgtatgctcagacgataaaggatgttgagggattggaaaa 86  Q
    |||| ||| ||||||||| |  ||||||| ||||||||||||||||||||||| | |||| | |||| |||||||||||||||    
T  17220169 ggagaagcggagaaaagctttggtaacacgggagatgtcaacttgtatgctcaaatgatagaagatgctgagggattggaaaa 17220251  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 9891559 - 9891616
Alignment:
Q  29 acactggagatgtcaacttgtatgctcagacgataaaggatgttgagggattggaaaa 86  Q
    |||| |||||||||||||||||||||| || |||| |||| | |||||||||||||||    
T  9891559 acacaggagatgtcaacttgtatgctctgatgatagaggacgctgagggattggaaaa 9891616  T

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Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 13403632 - 13403731
Alignment:
Q  101 ttctgaaggttggagacgcagagaaaagatttggtaacacgggagatgtcaatttgtatgctcagatgatagaggatgttaagggattggaaaagattga 200  Q
    |||||||| ||||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||| || |   |||||||||||||||||||    
T  13403632 ttctgaagattggagaagcagagaaaagctttggtaacgcgggagatgtcaacttgtatgctcagatgatagatgaggcggagggattggaaaagattga 13403731  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 13403643 - 13403725
Alignment:
Q  4 ggaggagcagagaaaagcataagtaacactggagatgtcaacttgtatgctcagacgataaaggatgttgagggattggaaaa 86  Q
    |||| ||||||||||||| |  ||||| | ||||||||||||||||||||||||| |||| | || |  ||||||||||||||    
T  13403643 ggagaagcagagaaaagctttggtaacgcgggagatgtcaacttgtatgctcagatgatagatgaggcggagggattggaaaa 13403725  T

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