View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3039_low_9 (Length: 471)

Name: NF3039_low_9
Description: NF3039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3039_low_9
NF3039_low_9
[»] chr1 (33 HSPs)
chr1 (255-447)||(37500285-37500486)
chr1 (73-255)||(38859849-38860031)
chr1 (26-182)||(42456523-42456679)
chr1 (73-181)||(3346786-3346892)
chr1 (73-182)||(10907669-10907778)
chr1 (70-248)||(5974985-5975161)
chr1 (73-182)||(26835336-26835445)
chr1 (27-181)||(48392428-48392579)
chr1 (27-181)||(29149570-29149723)
chr1 (73-181)||(7742801-7742907)
chr1 (73-181)||(49902468-49902574)
chr1 (70-168)||(5558305-5558402)
chr1 (73-251)||(10155968-10156144)
chr1 (73-181)||(23908285-23908391)
chr1 (73-251)||(42517246-42517426)
chr1 (73-161)||(30252787-30252875)
chr1 (127-251)||(47022754-47022878)
chr1 (90-182)||(30745359-30745451)
chr1 (90-182)||(30766810-30766902)
chr1 (73-182)||(44107409-44107518)
chr1 (27-182)||(14796828-14796983)
chr1 (27-182)||(14805702-14805857)
chr1 (132-182)||(37189697-37189747)
chr1 (206-251)||(7742731-7742776)
chr1 (73-117)||(1106774-1106818)
chr1 (199-251)||(23908399-23908451)
chr1 (206-251)||(48392358-48392403)
chr1 (126-182)||(13131947-13132003)
chr1 (220-254)||(42456705-42456739)
chr1 (76-117)||(37189304-37189345)
chr1 (129-182)||(44462499-44462552)
chr1 (199-251)||(29149510-29149562)
chr1 (199-251)||(49902592-49902644)
[»] chr4 (29 HSPs)
chr4 (27-255)||(17888498-17888726)
chr4 (27-256)||(31377342-31377570)
chr4 (28-182)||(46473948-46474101)
chr4 (27-168)||(322584-322725)
chr4 (73-251)||(1535771-1535947)
chr4 (78-181)||(20818570-20818673)
chr4 (27-181)||(34240946-34241099)
chr4 (26-181)||(46583563-46583717)
chr4 (75-182)||(9742554-9742661)
chr4 (73-255)||(11054451-11054635)
chr4 (73-181)||(49284357-49284463)
chr4 (73-169)||(35322738-35322834)
chr4 (92-181)||(36012207-36012295)
chr4 (73-181)||(52632518-52632624)
chr4 (73-181)||(25954750-25954856)
chr4 (73-182)||(12792252-12792361)
chr4 (73-181)||(50328794-50328902)
chr4 (127-181)||(16338235-16338289)
chr4 (73-181)||(37801286-37801392)
chr4 (77-182)||(10094414-10094524)
chr4 (125-182)||(47084062-47084119)
chr4 (73-251)||(35018936-35019111)
chr4 (73-181)||(54090179-54090286)
chr4 (73-181)||(33982000-33982110)
chr4 (144-181)||(36851409-36851446)
chr4 (199-252)||(20818691-20818744)
chr4 (205-246)||(46583508-46583549)
chr4 (127-167)||(5780790-5780830)
chr4 (73-117)||(16338329-16338372)
[»] chr5 (28 HSPs)
chr5 (27-254)||(8456912-8457139)
chr5 (27-182)||(10081097-10081252)
chr5 (78-178)||(9738008-9738108)
chr5 (73-182)||(25560348-25560457)
chr5 (73-182)||(42119620-42119729)
chr5 (73-250)||(38397598-38397773)
chr5 (73-181)||(23218485-23218591)
chr5 (70-182)||(614413-614525)
chr5 (75-251)||(37168985-37169159)
chr5 (73-251)||(6257362-6257538)
chr5 (73-251)||(16618522-16618698)
chr5 (73-182)||(11856293-11856402)
chr5 (70-251)||(15631610-15631790)
chr5 (95-181)||(39862509-39862594)
chr5 (73-182)||(36769095-36769203)
chr5 (73-182)||(27916137-27916247)
chr5 (70-169)||(6174740-6174840)
chr5 (73-182)||(29491435-29491542)
chr5 (73-182)||(29790240-29790347)
chr5 (100-182)||(10115185-10115267)
chr5 (79-182)||(33271291-33271393)
chr5 (200-254)||(10081272-10081326)
chr5 (200-251)||(39862439-39862490)
chr5 (73-117)||(10052618-10052662)
chr5 (73-113)||(22903255-22903295)
chr5 (199-251)||(23218609-23218661)
chr5 (125-167)||(19322058-19322100)
chr5 (73-105)||(2676533-2676565)
[»] chr2 (24 HSPs)
chr2 (27-254)||(3956524-3956751)
chr2 (73-251)||(29846442-29846618)
chr2 (73-251)||(42769710-42769886)
chr2 (27-182)||(6318479-6318635)
chr2 (31-179)||(1387312-1387459)
chr2 (73-181)||(14186460-14186566)
chr2 (73-182)||(41674727-41674837)
chr2 (28-179)||(33009625-33009777)
chr2 (92-181)||(14942066-14942154)
chr2 (73-181)||(19181548-19181654)
chr2 (73-251)||(40277240-40277416)
chr2 (73-182)||(40780053-40780163)
chr2 (70-182)||(2888036-2888148)
chr2 (27-169)||(28321737-28321879)
chr2 (73-182)||(14539725-14539834)
chr2 (73-167)||(23685406-23685500)
chr2 (73-167)||(43139744-43139839)
chr2 (199-251)||(3597842-3597894)
chr2 (208-255)||(1386110-1386157)
chr2 (199-251)||(14186390-14186442)
chr2 (199-251)||(14941996-14942048)
chr2 (127-167)||(3597903-3597943)
chr2 (73-117)||(32486242-32486286)
chr2 (226-254)||(33009812-33009840)
[»] chr3 (31 HSPs)
chr3 (29-253)||(20382473-20382695)
chr3 (27-181)||(5391411-5391563)
chr3 (73-182)||(19649393-19649503)
chr3 (73-182)||(1781760-1781869)
chr3 (74-180)||(54546904-54547009)
chr3 (73-182)||(36539630-36539739)
chr3 (73-181)||(13856099-13856205)
chr3 (73-181)||(23467516-23467622)
chr3 (73-181)||(40845939-40846045)
chr3 (73-182)||(10839401-10839510)
chr3 (73-251)||(21853197-21853373)
chr3 (81-182)||(43347357-43347457)
chr3 (73-182)||(8926764-8926873)
chr3 (73-181)||(44994990-44995097)
chr3 (73-179)||(32352847-32352951)
chr3 (73-182)||(48206852-48206960)
chr3 (73-181)||(3178702-3178809)
chr3 (25-181)||(8950526-8950681)
chr3 (70-167)||(22845398-22845493)
chr3 (73-167)||(33103742-33103835)
chr3 (82-182)||(46685804-46685903)
chr3 (206-251)||(5391588-5391633)
chr3 (27-169)||(6280393-6280534)
chr3 (74-117)||(19644415-19644458)
chr3 (27-173)||(47889679-47889824)
chr3 (73-114)||(36826043-36826084)
chr3 (199-251)||(8950456-8950508)
chr3 (199-251)||(13856223-13856275)
chr3 (199-251)||(44994920-44994972)
chr3 (79-107)||(36539722-36539750)
chr3 (77-117)||(40500292-40500332)
[»] chr7 (22 HSPs)
chr7 (73-182)||(33057678-33057786)
chr7 (27-182)||(19334581-19334736)
chr7 (92-251)||(10576691-10576849)
chr7 (73-182)||(10334176-10334285)
chr7 (73-251)||(34707116-34707292)
chr7 (73-181)||(29555961-29556067)
chr7 (73-182)||(17303135-17303245)
chr7 (73-251)||(44164695-44164871)
chr7 (92-181)||(32876552-32876640)
chr7 (92-181)||(34259536-34259624)
chr7 (27-181)||(24320461-24320613)
chr7 (92-181)||(29981135-29981223)
chr7 (73-181)||(29238165-29238271)
chr7 (73-178)||(26284404-26284507)
chr7 (125-182)||(15017823-15017880)
chr7 (97-169)||(9770682-9770753)
chr7 (200-251)||(29238095-29238146)
chr7 (200-251)||(34259643-34259694)
chr7 (200-254)||(19334509-19334563)
chr7 (222-254)||(33057618-33057650)
chr7 (200-251)||(29555891-29555942)
chr7 (200-251)||(29981065-29981116)
[»] chr8 (21 HSPs)
chr8 (73-251)||(42072428-42072604)
chr8 (73-181)||(21525358-21525464)
chr8 (73-251)||(22324596-22324772)
chr8 (73-251)||(35806794-35806970)
chr8 (73-181)||(26021395-26021502)
chr8 (73-181)||(42013872-42013978)
chr8 (73-181)||(33934391-33934497)
chr8 (88-181)||(21488080-21488172)
chr8 (90-179)||(24065289-24065377)
chr8 (125-182)||(16523156-16523213)
chr8 (73-182)||(10112045-10112154)
chr8 (73-171)||(19334782-19334879)
chr8 (77-182)||(43282872-43282977)
chr8 (73-169)||(16819007-16819105)
chr8 (207-251)||(33934321-33934365)
chr8 (73-117)||(34697475-34697519)
chr8 (205-251)||(21525488-21525534)
chr8 (73-114)||(2824270-2824311)
chr8 (129-182)||(16591396-16591449)
chr8 (219-256)||(42014016-42014053)
chr8 (125-169)||(2271245-2271289)
[»] chr6 (20 HSPs)
chr6 (73-181)||(9231876-9231982)
chr6 (75-182)||(13103139-13103246)
chr6 (73-181)||(14309820-14309926)
chr6 (73-181)||(24694673-24694779)
chr6 (73-182)||(27863698-27863806)
chr6 (73-182)||(28750671-28750780)
chr6 (127-181)||(1727955-1728009)
chr6 (73-169)||(11212670-11212765)
chr6 (127-181)||(13627592-13627646)
chr6 (73-182)||(34103684-34103792)
chr6 (73-117)||(11279539-11279583)
chr6 (131-181)||(24497596-24497646)
chr6 (200-251)||(9231806-9231857)
chr6 (70-117)||(24500786-24500833)
chr6 (203-253)||(34383361-34383411)
chr6 (126-167)||(8412717-8412758)
chr6 (27-117)||(11084563-11084653)
chr6 (199-251)||(24694603-24694655)
chr6 (149-181)||(11084664-11084696)
chr6 (199-251)||(13627664-13627716)
[»] scaffold0045 (1 HSPs)
scaffold0045 (70-182)||(34473-34585)
[»] scaffold0086 (1 HSPs)
scaffold0086 (73-182)||(20852-20953)
[»] scaffold0079 (2 HSPs)
scaffold0079 (127-181)||(54571-54625)
scaffold0079 (73-117)||(54488-54531)
[»] scaffold0016 (2 HSPs)
scaffold0016 (73-114)||(85509-85550)
scaffold0016 (127-167)||(85552-85592)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 255 - 447
Target Start/End: Complemental strand, 37500486 - 37500285
Alignment:
Q  255 acaaagaataagtgagacattttttaccctttagatgtaatgtgaaccatttaaacat---------gaggagtgttaccaacacacttttt-aacacac 344  Q
    |||||||||||| ||||| ||||| |||||||||||| |||||||||||||||| |||         ||| ||||||||||||||||||||| |||||||    
T  37500486 acaaagaataagagagacgtttttgaccctttagatg-aatgtgaaccatttaaccatttttagcatgagaagtgttaccaacacacttttttaacacac 37500388  T
Q  345 acctcgacccattctatttcattgactaaaactaatatgagtctcattatatatacatggaacccgcataagttaatttggtagggtttatatgaacttc 444  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37500387 acctcaacccattctatttcattgactaaaactaatatgagtctcattatatatacatggaacccgcataagttaatttggtagggtttatgtgaacttc 37500288  T
Q  445 aac 447  Q
    |||    
T  37500287 aac 37500285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 73 - 255
Target Start/End: Original strand, 38859849 - 38860031
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    |||||||||||||||| ||||||||||||||||||||||||||||       |||||| |||||| ||||||||||||||||||||||||||||||||||    
T  38859849 caacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatctaaaaaaattgcccaatttataggggtttatataagaaattcatag 38859948  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgcccatga 255  Q
    | ||||||||                |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38859949 gaatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccggggtcgccgggccatagaaccgcccatga 38860031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 42456523 - 42456679
Alignment:
Q  26 tagtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttataggg-atttacataagaaattgcaagcaaataatnnnnnnn 124  Q
    |||||||||||||||||||||||||| |||||||          || |||||||||||||||| ||||||||||||||||||||| | |||||           
T  42456523 tagtggcggagccaggattattgtaaggtccggg-aaaaaaaaattgcaacacatttataggggatttacataagaaattgcaagtagataataaatttt 42456621  T
Q  125 tctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  42456622 tttaaagaaattgcccaatttataggggtttatataagaaattcataggaatttacat 42456679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 3346786 - 3346892
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||    
T  3346786 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgtccaatttataggggtttatataagaaattcatag 3346883  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  3346884 ggatttaca 3346892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 10907778 - 10907669
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    |||||||||||||||  | ||||||||||||||||||||||||||       |||||||||||||||  |||||||||||||||||||||||||||| ||    
T  10907778 caacacatttataggtgtctacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgtctgatttataggggtttatataagaaattcagag 10907679  T
Q  173 ggatttacat 182  Q
    | ||||||||    
T  10907678 gaatttacat 10907669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 70 - 248
Target Start/End: Original strand, 5974985 - 5975161
Alignment:
Q  70 ttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattca 169  Q
    |||||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| | ||||||||||||||||||||||||||||     
T  5974985 ttacaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcctaatttataggggtttatataagaaattct 5975082  T
Q  170 tagggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccg 248  Q
    ||||||||||||                 ||||| |||||||||||| |||||||||||||||||||||| ||||||||    
T  5975083 tagggatttacacaagaaattgaaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccg 5975161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 26835336 - 26835445
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||| || ||||||| ||||||||||||||||||||       |||||| ||||||| ||||||||||| ||||||||||||||||||||     
T  26835336 caacacatttatatgggtttacatgagaaattgcaagcaaataatcaaaaaatctaaaaaaattgttcaatttataggagtttatataagaaattcatat 26835435  T
Q  173 ggatttacat 182  Q
    | ||||||||    
T  26835436 gaatttacat 26835445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 48392579 - 48392428
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntc 126  Q
    |||||||||||||||| |||||||||||||||||         || ||||||||||||||||  | |||||||||||||||||||||||||       |     
T  48392579 agtggcggagccaggaatattgtaaagtccgggcaaaaaaat-ttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tg 48392483  T
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    ||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  48392482 taatgaaattgcccaatttatagggatttatataagaaattcatagggatttaca 48392428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 29149723 - 29149570
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnntta-caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnnt 125  Q
    |||||||||||||||| |||||||||||||||||         ||  |||||||| |||||||  | |||||||||||||||||||||||||            
T  29149723 agtggcggagccaggaatattgtaaagtccgggcaaaaaaaaatttgcaacacatgtatagggcgt-acataagaaattgcaagcaaataataaaaaacg 29149625  T
Q  126 ctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
     ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29149624 -taaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 29149570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 7742907 - 7742801
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| |||||||||||||||||||||||||||||||||     
T  7742907 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcataa 7742810  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  7742809 ggatttaca 7742801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 49902468 - 49902574
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| || |||||||||||||||||||||||||||||||    
T  49902468 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgccctatttataggggtttatataagaaattcatag 49902565  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  49902566 ggatttaca 49902574  T

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Target: chr1; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 70 - 168
Target Start/End: Original strand, 5558305 - 5558402
Alignment:
Q  70 ttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattc 168  Q
    |||||||| |||||||||  |||| ||| |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  5558305 ttacaacatatttataggagtttatatatgaaattgcaagcaaataatcaaaaa-tctaaagaaattgtccaatttataggggtttatataagaaattc 5558402  T

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Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 251
Target Start/End: Complemental strand, 10156144 - 10155968
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | |||||||||||||||||||||||  |||||||||||||||||||||    
T  10156144 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tataaagaaattgtccaatttatagaagtttatataagaaattcatag 10156047  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    | |||||||                  |||| |||||||||||| |||||||||||||||||||||| |||||||||||    
T  10156046 gaatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 10155968  T

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Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 23908285 - 23908391
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||         ||||||||||||||||||||||||| ||||||||||||||||||||    
T  23908285 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaaca-taaagaaattgtccaatttatagggatttatataagaaattcatag 23908382  T
Q  173 ggatttaca 181  Q
    | |||||||    
T  23908383 gaatttaca 23908391  T

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Target: chr1; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 251
Target Start/End: Complemental strand, 42517426 - 42517246
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggttt----atataagaaattc 168  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| |||||||||||||||||    |||||||||||||    
T  42517426 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttgtttatataagaaattc 42517329  T
Q  169 atagggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||||||||||||                 ||||| |||||||||||| |||||||||||||||||||||| |||||||||||    
T  42517328 atagggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 42517246  T

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Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 30252875 - 30252787
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataa 161  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||       ||||||||| ||||| ||||||||||| |||||||||    
T  30252875 caacatatttataggggtttacataagaaattgcaagcaaataatcaaaaaatctaaagaagttgtctaatttatagggatttatataa 30252787  T

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Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 127 - 251
Target Start/End: Original strand, 47022754 - 47022878
Alignment:
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccg 226  Q
    ||||||||||| | |||||||||| ||||||||||||||||||||| ||||||||                 ||||| |||||||||||| |||||||||    
T  47022754 taaagaaattgcctaatttataggagtttatataagaaattcatagagatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccg 47022853  T
Q  227 gggtcgccgggccatagaaccgccc 251  Q
    ||||||||||||| |||||||||||    
T  47022854 gggtcgccgggccttagaaccgccc 47022878  T

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Target: chr1; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 30745359 - 30745451
Alignment:
Q  90 tttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    |||||||||||||||||||| |||||||       | ||||||||||||||||||||||||| |||||| |||||||||| ||  ||||||||    
T  30745359 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacat 30745451  T

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Target: chr1; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 30766810 - 30766902
Alignment:
Q  90 tttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    |||||||||||||||||||| |||||||       | ||||||||||||||||||||||||| |||||| |||||||||| ||  ||||||||    
T  30766810 tttacataagaaattgcaagtaaataatcaaaaaatttaaagaaattgtccaatttatagggatttataaaagaaattcagagaaatttacat 30766902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 44107518 - 44107409
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||| || |||||||||||||||||||| |||||||       ||| ||||||||    ||||||||||||||||||||| ||| ||| ||    
T  44107518 caacacatttataaggttttacataagaaattgcaagtaaataatcaaaaaatctgaagaaattaattaatttataggggtttatataaaaaaatcagag 44107419  T
Q  173 ggatttacat 182  Q
    | ||||||||    
T  44107418 gaatttacat 44107409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 14796828 - 14796983
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntc 126  Q
    ||||||||||| ||||||||| ||||||| ||||         || ||| ||||||||| || |||||||||||||||||||||||||| |       ||    
T  14796828 agtggcggagcaaggattattataaagtctgggcaaaacaaaattgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatc 14796927  T
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    ||||| ||| | | |||||||| | || ||||||||||||||| ||| ||||||||    
T  14796928 taaagtaatggcctaatttataagtgtgtatataagaaattcagaggaatttacat 14796983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 14805702 - 14805857
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntc 126  Q
    ||||||||||| ||||||||| ||||||| ||||         || ||| ||||||||| || |||||||||||||||||||||||||| |       ||    
T  14805702 agtggcggagcaaggattattataaagtctgggcaaaacaaaattgcaatacatttatacgggtttacataagaaattgcaagcaaatattcgaaaaatc 14805801  T
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    ||||| ||| | | |||||||| | || ||||||||||||||| ||| ||||||||    
T  14805802 taaagtaatggcctaatttataagtgtgtatataagaaattcagaggaatttacat 14805857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 132 - 182
Target Start/End: Original strand, 37189697 - 37189747
Alignment:
Q  132 aaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    |||||||||||||||||| | |||||||||||||||||||| |||||||||    
T  37189697 aaattgtccaatttatagagatttatataagaaattcatagagatttacat 37189747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 7742776 - 7742731
Alignment:
Q  206 cggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||    
T  7742776 cggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 7742731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 1106774 - 1106818
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataat 117  Q
    ||||||||||||| | |||||||||||||||||||||||||||||    
T  1106774 caacacatttataagaatttacataagaaattgcaagcaaataat 1106818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 23908399 - 23908451
Alignment:
Q  199 tttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||| |||||||||||| ||||||| |||||||||||||| |||||||||||    
T  23908399 tttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 23908451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 48392403 - 48392358
Alignment:
Q  206 cggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||||||||| ||||||||| |||||||||||| |||||||||||    
T  48392403 cggagcccgggcgagtgcccgaggtcgccgggccttagaaccgccc 48392358  T

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Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 13131947 - 13132003
Alignment:
Q  126 ctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    |||||||||||||||||||||||| | ||||||||| ||||| | ||| ||||||||    
T  13131947 ctaaagaaattgtccaatttatagtgatttatataaaaaatttagaggaatttacat 13132003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 254
Target Start/End: Original strand, 42456705 - 42456739
Alignment:
Q  220 gtgcccggggtcgccgggccatagaaccgcccatg 254  Q
    ||||||| |||||||||||||||||||||||||||    
T  42456705 gtgcccgaggtcgccgggccatagaaccgcccatg 42456739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 37189304 - 37189345
Alignment:
Q  76 cacatttatagggatttacataagaaattgcaagcaaataat 117  Q
    ||||||||||| | ||||||||||||||||||| ||||||||    
T  37189304 cacatttatagaggtttacataagaaattgcaaacaaataat 37189345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 44462552 - 44462499
Alignment:
Q  129 aagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    ||||||||||| ||||||||| ||||| ||||||||||||| |  |||||||||    
T  44462552 aagaaattgtctaatttatagaggtttgtataagaaattcagatagatttacat 44462499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 29149562 - 29149510
Alignment:
Q  199 tttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||| |||||||||||| ||||||| ||||||||| |||| || ||||||||    
T  29149562 tttggtccggagcccgggcgagtgcctggggtcgccaggccttaaaaccgccc 29149510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 49902592 - 49902644
Alignment:
Q  199 tttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||| |||||||||| | |||||||||| |||||||| || |||||||||||    
T  49902592 tttggcccggagcccgagcgagtgcccggagtcgccggaccttagaaccgccc 49902644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 27 - 255
Target Start/End: Complemental strand, 17888726 - 17888498
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntc 126  Q
    ||||||||||||||||||||||||||| | ||||         || |||||||||||||||| ||||||||||||||||||||||||||||       ||    
T  17888726 agtggcggagccaggattattgtaaagccggggcaaaaatatattgcaacacatttataggggtttacataagaaattgcaagcaaataataaaaaaatc 17888627  T
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccg 226  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||                |||||||||||||||||| |||||||||    
T  17888626 taaagaaattgcccaatttatagggggttatataagaaattcataggaatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcccg 17888527  T
Q  227 gggtcgccgggccatagaaccgcccatga 255  Q
    |||||||| ||||||||||||||||||||    
T  17888526 gggtcgcctggccatagaaccgcccatga 17888498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 27 - 256
Target Start/End: Original strand, 31377342 - 31377570
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntc 126  Q
    ||||||||||||||||||||||||||| ||||||         || |||||||||||||| | |||||||||||||||||||||||||| |       ||    
T  31377342 agtggcggagccaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttatagcggtttacataagaaattgcaagcaaatagttaaaaaatc 31377441  T
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccg 226  Q
    ||||||||||| ||||||||||| || |||||||||||||||||||||||||||||                |||||||||||||||||| |||||||||    
T  31377442 taaagaaattgcccaatttatagagggttatataagaaattcatagggatttacataagaaattgaaaaaa-tttgggccggagcccgggcgagtgcccg 31377540  T
Q  227 gggtcgccgggccatagaaccgcccatgac 256  Q
    ||||||||||||||||||||||||||||||    
T  31377541 gggtcgccgggccatagaaccgcccatgac 31377570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 28 - 182
Target Start/End: Original strand, 46473948 - 46474101
Alignment:
Q  28 gtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntct 127  Q
    |||||||||||||||||||||||||||| |||          || ||||||||||||| |||||||||||||||||| ||||||||||||       |||    
T  46473948 gtggcggagccaggattattgtaaagtctggg-taaaaaattttgcaacacatttataaggatttacataagaaattacaagcaaataatacaaaaatct 46474046  T
Q  128 aaagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    ||||||||||| ||||||||| |||||||||||| ||||||| ||| ||||||||    
T  46474047 aaagaaattgtacaatttatatgggtttatataaaaaattcacaggaatttacat 46474101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 27 - 168
Target Start/End: Complemental strand, 322725 - 322584
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntc 126  Q
    |||||||||||||||||||||  |||||| ||||         || ||||||||||| |||  ||||||||||||||||||||||||||||       |     
T  322725 agtggcggagccaggattattacaaagtctgggcaaaaaaaaattgcaacacatttacaggtgtttacataagaaattgcaagcaaataatcaaaaaatt 322626  T
Q  127 taaagaaattgtccaatttataggggtttatataagaaattc 168  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  322625 taaagaaattgtccaatttataggggtttatataagaaattc 322584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 1535771 - 1535947
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  1535771 caacacatttatagggcat-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 1535868  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||||||||                 ||||| |||||||||||| |||||||| ||||||||||||| |||||||||||    
T  1535869 ggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgccccgggtcgccgggccttagaaccgccc 1535947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 78 - 181
Target Start/End: Original strand, 20818570 - 20818673
Alignment:
Q  78 catttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatt 177  Q
    ||||||||| | ||||||||||||||||||| ||||||||       |||||| |||||| |||||||||||| ||||||||||||||||||||||||||    
T  20818570 catttatagaggtttacataagaaattgcaaacaaataatcaaaaaatctaaaaaaattgaccaatttataggagtttatataagaaattcatagggatt 20818669  T
Q  178 taca 181  Q
    ||||    
T  20818670 taca 20818673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 34240946 - 34241099
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnntt-acaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnnt 125  Q
    |||||||||||||||| |||||||||| ||||||         || |||||||||||||||||  | |||||||||||||||||||||||||       |    
T  34240946 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaattttacaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-t 34241043  T
Q  126 ctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
     ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  34241044 gtaaagaaattgcccaatttataggggtttatataagaaattcatagggatctaca 34241099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 46583717 - 46583563
Alignment:
Q  26 tagtggcggagccaggattattgtaaagtccgggcnnnnnnnnntt-acaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnn 124  Q
    ||||||||||| ||||| |||||||||||||||||         || |||||||||||||| ||  | |||||||||||||||||||||||||           
T  46583717 tagtggcggagtcaggaatattgtaaagtccgggcaaaaaaaaatttacaacacatttatatggcgt-acataagaaattgcaagcaaataataaaaaa- 46583620  T
Q  125 tctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    | ||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  46583619 tgtaaagaaattgcctaatttataggggtttatataagaaattcatagggatttaca 46583563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 9742661 - 9742554
Alignment:
Q  75 acacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcataggg 174  Q
    |||||||||||||  |||||||||||||||||| | |||||||       ||||||||||||| |||||||||||||||| |||||||||||||| |||     
T  9742661 acacatttataggtgtttacataagaaattgcatgaaaataatcaaaaaatctaaagaaattgcccaatttataggggttaatataagaaattcagagga 9742562  T
Q  175 atttacat 182  Q
    ||||||||    
T  9742561 atttacat 9742554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 255
Target Start/End: Original strand, 11054451 - 11054635
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnnt---ctaaagaaattgtccaatttataggggtttatataagaaattca 169  Q
    |||||||||||||  | |||||||||||||||||||||||||||            ||||||| |||| ||||||||||| |||||||||||||||||||    
T  11054451 caacacatttataaaggtttacataagaaattgcaagcaaataaataaaaaaaatactaaagagattgcccaatttatagaggtttatataagaaattca 11054550  T
Q  170 tagggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgcccatga 255  Q
    |||||||||||||                || || ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  11054551 tagggatttacataagaaattgcaaaaaatt-ggaccggagcccgggtgagtgctcggggtcgccgggccatagaaccgcccatga 11054635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 49284357 - 49284463
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||| ||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  49284357 caacacatttatagggcgt-acataagaaattgcaaacaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 49284454  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  49284455 ggatttaca 49284463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 35322834 - 35322738
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattca 169  Q
    |||||| ||||||||| |||| |||||||||||||||||||||||       |||||||||||||| |||||||||| ||||||||||||| |||||    
T  35322834 caacacttttataggggtttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatagaggtttatataagagattca 35322738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 36012295 - 36012207
Alignment:
Q  92 tacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    ||||||| ||||||||||||||||||       | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36012295 tacataaaaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 36012207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 52632518 - 52632624
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | ||||||||||||||||||||||| |       | ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  52632518 caacacatttatagggcgt-acataagaaattgcaagcaaata-ttaaaaaatgtaaagaaattgcccaatttatagggatttatataagaaattcatag 52632615  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  52632616 ggatttaca 52632624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 25954750 - 25954856
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| |||||||||||| |||||||||||||||||||||    
T  25954750 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggagtttatataagaaattcatag 25954847  T
Q  173 ggatttaca 181  Q
    | |||||||    
T  25954848 gaatttaca 25954856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 12792361 - 12792252
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||   |||| |||||||||| ||||||||||||       ||||||| ||||| ||||||||||||||||||||||||||||||| ||    
T  12792361 caacacatttatagatgtttatataagaaatttcaagcaaataatctaaaaatctaaagtaattgcccaatttataggggtttatataagaaattcagag 12792262  T
Q  173 ggatttacat 182  Q
      ||||||||    
T  12792261 aaatttacat 12792252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 50328794 - 50328902
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||| || ||||||||| ||||||||||  ||||||       | ||||||||||||||||||||||| ||||||||||||||||| | ||    
T  50328794 caacacatttataagggtttacataaaaaattgcaagtgaataataaaaaaatttaaagaaattgtccaatttatagaggtttatataagaaattaagag 50328893  T
Q  173 ggatttaca 181  Q
    | |||||||    
T  50328894 gaatttaca 50328902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 16338289 - 16338235
Alignment:
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||    
T  16338289 taaagaaattgtccaatttatagggatttatataaaaaattcataggaatttaca 16338235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 37801392 - 37801286
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||| ||| ||||||||||||| ||||||||| ||||||||||    
T  37801392 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaatttgcccaatttatagggatttatataaaaaattcatag 37801295  T
Q  173 ggatttaca 181  Q
      |||||||    
T  37801294 aaatttaca 37801286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 10094524 - 10094414
Alignment:
Q  77 acatttatagggatttacataagaaat-----tgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcata 171  Q
    |||||||||||  ||||||||||||||     ||||||||||||||       |||||| |||||  ||||||||||||||||||||||||||||||| |    
T  10094524 acatttataggtgtttacataagaaatataattgcaagcaaataatcaaaaaatctaaataaattacccaatttataggggtttatataagaaattcaga 10094425  T
Q  172 gggatttacat 182  Q
    |  ||||||||    
T  10094424 gaaatttacat 10094414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 47084062 - 47084119
Alignment:
Q  125 tctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| ||  ||||||||    
T  47084062 tctaaagaaattacccaatttataggggtttatataagaaattcagagaaatttacat 47084119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 35018936 - 35019111
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||| || | ||||||||||||||||||||||||||       | ||||||||||  | |||||||| |||||||||||||||||||||||    
T  35018936 caacacatttataagg-tgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattacctaatttataagggtttatataagaaattcatag 35019033  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    | |||||||                 ||||| || ||||||||| |||||||| ||||||||||||| |||||||||||    
T  35019034 g-atttacacaagaaattgtaaaaaatttggcccagagcccgggcgagtgcccagggtcgccgggccttagaaccgccc 35019111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 54090179 - 54090286
Alignment:
Q  73 caacacatttatagggatttacataagaaa-ttgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcata 171  Q
    |||||||| ||||||| ||||||||| ||| |||||||||||||||       |||||| |||||| |||||||||| | |||||||||| ||||||| |    
T  54090179 caacacatctataggg-tttacataaaaaaattgcaagcaaataataaaaaa-tctaaaaaaattgcccaatttataagagtttatataataaattcaga 54090276  T
Q  172 gggatttaca 181  Q
    ||||||||||    
T  54090277 gggatttaca 54090286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 33982000 - 33982110
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaa--taatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcat 170  Q
    ||||||||||| | || ||||||||| ||||||||||||||  || |       |||||||||||| || |||||||| | |||||||||||||||| |     
T  33982000 caacacatttacatgggtttacataaaaaattgcaagcaaaaatattaatacaatctaaagaaattatctaatttataagagtttatataagaaatttag 33982099  T
Q  171 agggatttaca 181  Q
    |||||||||||    
T  33982100 agggatttaca 33982110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 36851446 - 36851409
Alignment:
Q  144 ttataggggtttatataagaaattcatagggatttaca 181  Q
    |||||||||||||||||| |||||||||||||||||||    
T  36851446 ttataggggtttatataataaattcatagggatttaca 36851409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 20818691 - 20818744
Alignment:
Q  199 tttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccca 252  Q
    |||||| | ||||||||| |||||||||| ||||||||  ||||||||||||||    
T  20818691 tttgggtcagagcccgggcgagtgcccggagtcgccggatcatagaaccgccca 20818744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 46583549 - 46583508
Alignment:
Q  205 ccggagcccgggtgagtgcccggggtcgccgggccatagaac 246  Q
    |||||||||||| ||||||||||||||||||| || ||||||    
T  46583549 ccggagcccgggcgagtgcccggggtcgccggaccttagaac 46583508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 5780830 - 5780790
Alignment:
Q  127 taaagaaattgtccaatttataggggtttatataagaaatt 167  Q
    ||||||||||| |||||||||| || |||||||||||||||    
T  5780830 taaagaaattgcccaatttataaggatttatataagaaatt 5780790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 16338372 - 16338329
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataat 117  Q
    ||||||||||||||||  | |||||||||||||||||||||||||    
T  16338372 caacacatttatagggcgt-acataagaaattgcaagcaaataat 16338329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 27 - 254
Target Start/End: Complemental strand, 8457139 - 8456912
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntc 126  Q
    ||||||||||||| ||||||||||||| ||||||         || ||||| |||||||||| ||||||||||||||||||||||||||||       ||    
T  8457139 agtggcggagccaagattattgtaaagcccgggcaaaaaaaaattgcaacatatttataggggtttacataagaaattgcaagcaaataataaaaaaatc 8457040  T
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccg 226  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||                |||||||||||||||||| ||||||  |    
T  8457039 taaagaaattgcccaatttatagggggttatataagaaattcatagggatttacataagaaattgaaaaaaatttgggccggagcccgggcgagtgcatg 8456940  T
Q  227 gggtcgccgggccatagaaccgcccatg 254  Q
    ||||||||||||||||||||||||||||    
T  8456939 gggtcgccgggccatagaaccgcccatg 8456912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 27 - 182
Target Start/End: Original strand, 10081097 - 10081252
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntc 126  Q
    ||||||||||||||||||||||||||| ||||||         || |||||||||||||||  |||||||||||||||| |||||||||||       ||    
T  10081097 agtggcggagccaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttataggagtttacataagaaattgtaagcaaataataaaaaaatc 10081196  T
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10081197 taaagaaattgcccaatttataggggtttatataagaaattcatagggatttacat 10081252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 9738108 - 9738008
Alignment:
Q  78 catttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatt 177  Q
    ||||||||||| |||||||||||||||||||||||||||        ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9738108 catttataggggtttacataagaaattgcaagcaaataaacaaaaaatctaaagaaattgtccaatttatagggatttatataagaaattcatagggatt 9738009  T
Q  178 t 178  Q
    |    
T  9738008 t 9738008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 25560457 - 25560348
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||| || ||||||||||||||||||||||||||||       |||||||||||||||||||||||||  |||||||||||||||| |||     
T  25560457 caacacatttatatgggtttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatataagaaatttataa 25560358  T
Q  173 ggatttacat 182  Q
    ||||||||||    
T  25560357 ggatttacat 25560348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 42119620 - 42119729
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    |||||||||||||||| ||||||||||||||| ||| ||||||||       ||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  42119620 caacacatttataggggtttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatagaggtttatataagaaattcagag 42119719  T
Q  173 ggatttacat 182  Q
    | ||||||||    
T  42119720 gaatttacat 42119729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 73 - 250
Target Start/End: Original strand, 38397598 - 38397773
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  38397598 caacacatttatagg-acgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 38397695  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgcc 250  Q
    |||||||||                 ||||| |||||||||||| |||||||||||||||||||||| ||||||||||    
T  38397696 ggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgcc 38397773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 23218485 - 23218591
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||| | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  23218485 caacacatttatagggagt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 23218582  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  23218583 ggatttaca 23218591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 614525 - 614413
Alignment:
Q  70 ttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattca 169  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||       ||||||||||||| | ||||||||||| ||||||||| |||||||    
T  614525 ttacaacacatttataggtgtttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgccaaatttatagggatttatataaaaaattca 614426  T
Q  170 tagggatttacat 182  Q
     ||| ||||||||    
T  614425 gaggaatttacat 614413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 75 - 251
Target Start/End: Complemental strand, 37169159 - 37168985
Alignment:
Q  75 acacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcataggg 174  Q
    ||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37169159 acacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcataggg 37169062  T
Q  175 atttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||||||                 ||||| ||||||||||||  ||||||||||||||||||||| |||||||||||    
T  37169061 atttacacaaaaaattgcaaaaaatttggcccggagcccgggcaagtgcccggggtcgccgggccttagaaccgccc 37168985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 251
Target Start/End: Complemental strand, 6257538 - 6257362
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | | |||||||||||||||||||||||       | ||||||||||| ||||||||||||||||| ||||||||||||||||    
T  6257538 caacacatttatagggcgt-atataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttgtataagaaattcatag 6257441  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||||||||                 ||||| |||||||||||| |||||||||||||||||||||| |||||||||||    
T  6257440 ggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 6257362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 251
Target Start/End: Complemental strand, 16618698 - 16618522
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | |||| ||||||||||||||||||| |||||||||||||||||||||    
T  16618698 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tataaaaaaattgtccaatttataggagtttatataagaaattcatag 16618601  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||||||||                 ||||| |||||||||||  |||||||||||||||||||||| |||||||||||    
T  16618600 ggatttacacaagaaattgtaaaaaatttggcccggagcccggacgagtgcccggggtcgccgggccttagaaccgccc 16618522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 11856293 - 11856402
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||| |||||||||  |||||||||||||||||||| |||||||       ||||||||||||| ||||||||||| | ||||||||||||||||| ||    
T  11856293 caacatatttataggagtttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatataagaaattcagag 11856392  T
Q  173 ggatttacat 182  Q
     |||||||||    
T  11856393 cgatttacat 11856402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 70 - 251
Target Start/End: Original strand, 15631610 - 15631790
Alignment:
Q  70 ttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttatagggg-tttatataagaaattc 168  Q
    ||||||| |||||||||||  | |||||||||||||||||||||||||       | |||||||||||||||||||||||||| ||||||||||||||||    
T  15631610 ttacaacgcatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgtccaatttatagggggtttatataagaaattc 15631707  T
Q  169 atagggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||||||||| |                 ||||| | |||||||||| |||||||||||||||||||||| |||||||||||    
T  15631708 atagggatttatacaagaaattgtaaaaaatttggcctggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 15631790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 39862594 - 39862509
Alignment:
Q  95 ataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    |||||||||||||||||||||||       ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  39862594 ataagaaattgcaagcaaataataaaaaa-tctaaagaaattgcccaatttataggggtttatataagaaattcataggaatttaca 39862509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 36769203 - 36769095
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    |||||||||||||||| |||||||| |||||||||||||||||||       ||||||||||||| | |||| |||| ||||||||||||||||||| ||    
T  36769203 caacacatttataggggtttacatatgaaattgcaagcaaataat-caaaaatctaaagaaattgcctaattcatagaggtttatataagaaattcagag 36769105  T
Q  173 ggatttacat 182  Q
    | ||||||||    
T  36769104 gaatttacat 36769095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 27916137 - 27916247
Alignment:
Q  73 caacacatttatagg-gatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcata 171  Q
    ||||||||||||||| | |||| |||||||||||||| ||||||||       ||||| |||||||  ||||||||||| |||||||||||||||||| |    
T  27916137 caacacatttataggaggtttatataagaaattgcaaacaaataataaaaaaatctaatgaaattgctcaatttataggagtttatataagaaattcaga 27916236  T
Q  172 gggatttacat 182  Q
    || ||||||||    
T  27916237 ggaatttacat 27916247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 6174740 - 6174840
Alignment:
Q  70 ttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttata--ggggtttatataagaaatt 167  Q
    |||||||| |||||| ||| |||||||| |||||||||||||||||||       | ||||||||||||||||||||||  |||||||||||||||||||    
T  6174740 ttacaacatatttatgggggtttacataggaaattgcaagcaaataataaaaaa-tataaagaaattgtccaatttataggggggtttatataagaaatt 6174838  T
Q  168 ca 169  Q
    ||    
T  6174839 ca 6174840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 29491542 - 29491435
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||| |  ||| ||||||||||||||||||||||||       | ||||||| |||||||||||||||||| |||||||||||||||||||    
T  29491542 caacacatttatatgtgtttgcataagaaattgcaagcaaataatcaaaaaatttaaagaa-ttgtccaatttatagggg-ttatataagaaattcatag 29491445  T
Q  173 ggatttacat 182  Q
      ||||||||    
T  29491444 aaatttacat 29491435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 29790347 - 29790240
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    |||||| |||||||||| ||||||||||||||  |||||||||||        |||||||||||| ||||||||||  |||||||||||||||||||||     
T  29790347 caacacgtttatagggaattacataagaaattaaaagcaaataatcaaaaa--ctaaagaaattgcccaatttataaaggtttatataagaaattcataa 29790250  T
Q  173 ggatttacat 182  Q
    | ||||||||    
T  29790249 gaatttacat 29790240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 10115185 - 10115267
Alignment:
Q  100 aaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    ||||||||||||||||||       ||||||||||||||| ||||||| |||||||||||||||||| || ||| ||||||||    
T  10115185 aaattgcaagcaaataattaaaaaatctaaagaaattgtctaatttattggggtttatataagaaatccagaggaatttacat 10115267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 182
Target Start/End: Complemental strand, 33271393 - 33271291
Alignment:
Q  79 atttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggattt 178  Q
    |||||||||| |||| |||||||||| ||| ||||||||       | ||||||||||||||||||||||| |||||||||||||||||||  || ||||    
T  33271393 atttataggggtttatataagaaattacaaacaaataataaaaaa-tataaagaaattgtccaatttatagaggtttatataagaaattcaacggaattt 33271295  T
Q  179 acat 182  Q
    ||||    
T  33271294 acat 33271291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 10081272 - 10081326
Alignment:
Q  200 ttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgcccatg 254  Q
    ||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  10081272 ttgggccagagcccgggcgagtgcctgggatcgccgggccatagaaccgcccatg 10081326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 39862490 - 39862439
Alignment:
Q  200 ttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||| ||||||| |||| |||||||||||||||||||||| |||||||||||    
T  39862490 ttggcccggagctcgggcgagtgcccggggtcgccgggccttagaaccgccc 39862439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 10052662 - 10052618
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataat 117  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||    
T  10052662 caacatatttataggcttttacataagaaattgcaagcaaataat 10052618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 22903255 - 22903295
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaa 113  Q
    |||||||||||||| | ||||||||||||||||||||||||    
T  22903255 caacacatttatagaggtttacataagaaattgcaagcaaa 22903295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 23218609 - 23218661
Alignment:
Q  199 tttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||| ||||| |||||| ||||||||||| |||||||||| |||||||||||    
T  23218609 tttggcccggaacccgggcgagtgcccgggatcgccgggccttagaaccgccc 23218661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 19322100 - 19322058
Alignment:
Q  125 tctaaagaaattgtccaatttataggggtttatataagaaatt 167  Q
    ||||||| ||||| |||||||||||| ||||||||||||||||    
T  19322100 tctaaagtaattgcccaatttataggagtttatataagaaatt 19322058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 2676565 - 2676533
Alignment:
Q  73 caacacatttatagggatttacataagaaattg 105  Q
    |||||||||||||||| ||||||||||||||||    
T  2676565 caacacatttataggggtttacataagaaattg 2676533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 4e-42; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 27 - 254
Target Start/End: Original strand, 3956524 - 3956751
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntc 126  Q
    ||||||||||||||||||||||||||| ||||||         || |||||||||||||| | |||||||  |||||||||||||||||||       |     
T  3956524 agtggcggagccaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttatagaggtttacatttgaaattgcaagcaaataataaaaaattt 3956623  T
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccg 226  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||                |||||||||||||||||| |||||||||    
T  3956624 taaagaaattgtccaatttacaggggtttatataataaattcatagggatttacataaaaaattgaaaattttttgggccggagcccgggcgagtgcccg 3956723  T
Q  227 gggtcgccgggccatagaaccgcccatg 254  Q
    ||||| ||||||||||||||||||||||    
T  3956724 gggtcaccgggccatagaaccgcccatg 3956751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 29846442 - 29846618
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||    
T  29846442 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgtccaatttataggggtttatataagaaattcatag 29846539  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||||||||                 ||||| |||||||||||| ||||||||||||||| |||||| |||||||||||    
T  29846540 ggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgtcgggccttagaaccgccc 29846618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 251
Target Start/End: Complemental strand, 42769886 - 42769710
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  42769886 caacacatttatagggcat-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 42769789  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||||||||                 ||||| |||||||||||| |||||||||||||||||||||| |||||||||||    
T  42769788 ggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 42769710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 6318635 - 6318479
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnn-t 125  Q
    ||||||||||  ||||||||||||||| ||||||         || ||||||||||||||||  ||||||  |||||||||||||||||||        |    
T  6318635 agtggcggagttaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttataggggcttacatttgaaattgcaagcaaataataaaaaaaat 6318536  T
Q  126 ctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  6318535 ctaaagaaattgcccaatttatagggatttatataagaaattcatagggatttacat 6318479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 1387459 - 1387312
Alignment:
Q  31 gcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaa 130  Q
    |||||||||||||||||||||||| ||||          || |||||||||| || || ||||||||||||||||||||||||||||       ||||||    
T  1387459 gcggagccaggattattgtaaagttcgggtaaaaaaaatttgcaacacatttgtaagggtttacataagaaattgcaagcaaataataaaaaa-tctaaa 1387361  T
Q  131 gaaattgtccaatttataggggtttatataagaaattcatagggattta 179  Q
    ||||||  ||||||||||||||||||| |||||||||||||||||||||    
T  1387360 gaaattacccaatttataggggtttatctaagaaattcatagggattta 1387312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 14186566 - 14186460
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  14186566 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaag-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 14186469  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  14186468 ggatttaca 14186460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 41674837 - 41674727
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnn-tctaaagaaattgtccaatttataggggtttatataagaaattcata 171  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |        |||||||||||||||||||||||| |||||||||||| ||||||| |    
T  41674837 caacacatttatagggatttatataagaaattgcaagcaaatagttaaaaaaatctaaagaaattgtccaatttataagggtttatataaaaaattcaga 41674738  T
Q  172 gggatttacat 182  Q
    | |||||||||    
T  41674737 gagatttacat 41674727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 28 - 179
Target Start/End: Original strand, 33009625 - 33009777
Alignment:
Q  28 gtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnn-tc 126  Q
    |||||||||||| |||||||||||||| |||||         || |||||| |||||| || ||||||||| ||||||||||||||||||        ||    
T  33009625 gtggcggagccatgattattgtaaagttcgggcaaaaaaattttgcaacacgtttatatgggtttacataaaaaattgcaagcaaataataataaaaatc 33009724  T
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggattta 179  Q
    |||||||||||||||||||||| || ||||||||| |||||||||||||||||    
T  33009725 taaagaaattgtccaatttataaggatttatataacaaattcatagggattta 33009777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 14942154 - 14942066
Alignment:
Q  92 tacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    ||||||||||||||||||||||||||       | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14942154 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 14942066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 19181548 - 19181654
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  19181548 caacacatttatagggcat-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 19181645  T
Q  173 ggatttaca 181  Q
    | |||||||    
T  19181646 gaatttaca 19181654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 251
Target Start/End: Complemental strand, 40277416 - 40277240
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||| ||||||||||||||| ||||    
T  40277416 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaatttatag 40277319  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||||||||                ||||| |||||||||||   ||||||||||||||||||||| |||||||||||    
T  40277318 ggatttacataaaaaattgcaaaaaatttggcccggagcccggacaagtgcccggggtcgccgggccttagaaccgccc 40277240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 40780053 - 40780163
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggg-gtttatataagaaattcata 171  Q
    ||||| |||||||| | ||||||||||||||||||||||||||||       | |||| |||||||| ||||||||||| |||||||||||||||||| |    
T  40780053 caacatatttatagcggtttacataagaaattgcaagcaaataattaaaaaatttaaaaaaattgtcaaatttatagggtgtttatataagaaattcaga 40780152  T
Q  172 gggatttacat 182  Q
    || ||||||||    
T  40780153 ggaatttacat 40780163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 70 - 182
Target Start/End: Original strand, 2888036 - 2888148
Alignment:
Q  70 ttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattca 169  Q
    |||||||| |||||||||| |||||||||||  |||| ||||| ||||       |||||| ||||||| ||||||||||| |||||||||| |||||||    
T  2888036 ttacaacatatttataggggtttacataagactttgctagcaattaataaaaaaatctaaaaaaattgttcaatttataggagtttatataaaaaattca 2888135  T
Q  170 tagggatttacat 182  Q
    ||| |||||||||    
T  2888136 tagagatttacat 2888148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 28321879 - 28321737
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntc 126  Q
    ||||||||||||||||||||| ||||||| ||||         || |||||||||||||||| |||| ||||||||||| |||||||||||       |     
T  28321879 agtggcggagccaggattattataaagtctgggcaaataaaaattgcaacacatttataggggtttatataagaaattggaagcaaataatcaaaaaatt 28321780  T
Q  127 taaagaaattgtccaatttataggggtttatataagaaattca 169  Q
     || ||||||| |||||||||| |||||||||||||| |||||    
T  28321779 caatgaaattgcccaatttataagggtttatataagatattca 28321737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 14539834 - 14539725
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    |||||||||||||||  |||| ||||||||||||||| |||||||       ||||||||||||| | ||||||||||  ||||||||||||||||| ||    
T  14539834 caacacatttataggtgtttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatataagaaattcagag 14539735  T
Q  173 ggatttacat 182  Q
    | | ||||||    
T  14539734 gaaattacat 14539725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 23685500 - 23685406
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaatt 167  Q
    ||||| ||||||| || ||||||||||||||||||||||||||||       | |||| |||||||| |||||||| || |||||||||||||||    
T  23685500 caacatatttataagggtttacataagaaattgcaagcaaataatcaaaatatataaataaattgtcaaatttataaggatttatataagaaatt 23685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 43139744 - 43139839
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnn-tctaaagaaattgtccaatttataggggtttatataagaaatt 167  Q
    |||| ||||| ||||  |||| |||||||||||||||||||||||        |||||||||||||  ||||||||||||||||||||||||||||    
T  43139744 caacgcatttgtaggtgtttatataagaaattgcaagcaaataataaaaaaaatctaaagaaattgctcaatttataggggtttatataagaaatt 43139839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 3597894 - 3597842
Alignment:
Q  199 tttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||| |||||||||||| ||||||| |||||||||||||| |||||||||||    
T  3597894 tttggcccggagcccgggcgagtgcctggggtcgccgggccttagaaccgccc 3597842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 1386157 - 1386110
Alignment:
Q  208 gagcccgggtgagtgcccggggtcgccgggccatagaaccgcccatga 255  Q
    ||||||||| ||||||||||||||| || |||||||||||||||||||    
T  1386157 gagcccgggcgagtgcccggggtcgtcgagccatagaaccgcccatga 1386110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 14186442 - 14186390
Alignment:
Q  199 tttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||| ||||||| |||| ||||||| |||||||||||||| |||||||||||    
T  14186442 tttggcccggagctcgggcgagtgcctggggtcgccgggccttagaaccgccc 14186390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 14942048 - 14941996
Alignment:
Q  199 tttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||| |||||||||||| ||||| |||||||||||| ||| |||||||||||    
T  14942048 tttggcccggagcccgggcgagtgtccggggtcgccgagccttagaaccgccc 14941996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 3597943 - 3597903
Alignment:
Q  127 taaagaaattgtccaatttataggggtttatataagaaatt 167  Q
    ||||||||||||||||||||||||| |||| | ||||||||    
T  3597943 taaagaaattgtccaatttatagggatttacacaagaaatt 3597903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 32486242 - 32486286
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataat 117  Q
    ||||||||||||| |  |||| |||||||||||||||||||||||    
T  32486242 caacacatttataagtgtttatataagaaattgcaagcaaataat 32486286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 33009812 - 33009840
Alignment:
Q  226 ggggtcgccgggccatagaaccgcccatg 254  Q
    |||||||||||||||||||||||||||||    
T  33009812 ggggtcgccgggccatagaaccgcccatg 33009840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 29 - 253
Target Start/End: Original strand, 20382473 - 20382695
Alignment:
Q  29 tggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntcta 128  Q
    |||| |||||||||||||||||||||||||||         || |||| ||||||||||  ||||||||||||||||||||||||||||       ||||    
T  20382473 tggcagagccaggattattgtaaagtccgggcaaaaaaaaattgcaacgcatttataggagtttacataagaaattgcaagcaaataataaaaaaatcta 20382572  T
Q  129 aagaaattgtccaatttataggggtttatataagaaattcatagggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggg 228  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||  ||||||||||    
T  20382573 aagaaatttcccaatttataggggtttatataagaaattcatagggatttacat-aagaaattaaaaaaatttgggccggagcccgggcaagtgcccggg 20382671  T
Q  229 gtcgccgggccatagaaccgcccat 253  Q
    |||||| ||||||||||||||||||    
T  20382672 gtcgcc-ggccatagaaccgcccat 20382695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 27 - 181
Target Start/End: Original strand, 5391411 - 5391563
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntc 126  Q
    |||||||||||||||| |||||||||| ||||||         || ||||||||||||||||  | |||||||||||||||||||||||||       |     
T  5391411 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaatttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tg 5391508  T
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5391509 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 5391563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 19649503 - 19649393
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnn-tctaaagaaattgtccaatttataggggtttatataagaaattcata 171  Q
    ||||||||||||||||| |||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||||||||||    
T  19649503 caacacatttatagggaattacataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttatataagaaattcata 19649404  T
Q  172 gggatttacat 182  Q
    | |||||||||    
T  19649403 gcgatttacat 19649393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 1781760 - 1781869
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    |||||||||||||||| |||||||| |||||||||||||||||||       ||||||||||||| ||||||||| ||||||||||||||||||||| ||    
T  1781760 caacacatttataggggtttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatataagaaattcagag 1781859  T
Q  173 ggatttacat 182  Q
    ||||||||||    
T  1781860 ggatttacat 1781869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 74 - 180
Target Start/End: Original strand, 54546904 - 54547009
Alignment:
Q  74 aacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagg 173  Q
    |||||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  54546904 aacacatttatagggatttacataagaaattgtaagcaaataatcaaaaa-tctaaagaaattgtccaatttataggggtttatataagaaattcaaagg 54547002  T
Q  174 gatttac 180  Q
     ||||||    
T  54547003 aatttac 54547009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 36539630 - 36539739
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||       | ||||||||||| |||||||||||||| |||||||||||||| ||||    
T  36539630 caacacatttataggggtttacataggaaattgcaaacaaataatcaaaaaatttaaagaaattgcccaatttataggggattatataagaaatttatag 36539729  T
Q  173 ggatttacat 182  Q
    ||||||||||    
T  36539730 ggatttacat 36539739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 13856099 - 13856205
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||||||||||||||||| ||||||||||||||||||||    
T  13856099 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgtccaatttatagggatttatataagaaattcatag 13856196  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  13856197 ggatttaca 13856205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 23467622 - 23467516
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  23467622 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 23467525  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  23467524 ggatttaca 23467516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 40846045 - 40845939
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  40846045 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 40845948  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  40845947 ggatttaca 40845939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 10839510 - 10839401
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    |||||||| ||||||  ||||||||||||||||||||||||||||       ||||||||||||| ||||||||||| ||||||||||||||||||| ||    
T  10839510 caacacatgtataggtgtttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttatagaggtttatataagaaattcagag 10839411  T
Q  173 ggatttacat 182  Q
      ||||||||    
T  10839410 aaatttacat 10839401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 21853197 - 21853373
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  21853197 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggttttatataagaaattcatag 21853294  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||||||||                 ||||| |||||||||||  |||||||||||||||||||||| |||||||||||    
T  21853295 ggatttacacaagaaattgcaaaaaatttggcccggagcccggccgagtgcccggggtcgccgggccttagaaccgccc 21853373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 81 - 182
Target Start/End: Complemental strand, 43347457 - 43347357
Alignment:
Q  81 ttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttac 180  Q
    |||||||| ||||||||||||||||||||||||||||       ||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||||||    
T  43347457 ttataggg-tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttgtaggggtttatataagaaattcagaggaatttac 43347359  T
Q  181 at 182  Q
    ||    
T  43347358 at 43347357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 8926764 - 8926873
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||| || || |||||||||||||||||||||||||       |||| |||||||| | ||||||||||||||||||| ||||||||| ||    
T  8926764 caacacatttataagggttaacataagaaattgcaagcaaataatcaaaaaatctacagaaattgccaaatttataggggtttatatcagaaattcagag 8926863  T
Q  173 ggatttacat 182  Q
    | ||||||||    
T  8926864 gaatttacat 8926873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 44995097 - 44994990
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttata-ggggtttatataagaaattcata 171  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| |||||||||| |||||||||||||||||||||||    
T  44995097 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataaggggtttatataagaaattcata 44995000  T
Q  172 gggatttaca 181  Q
    ||||||||||    
T  44994999 gggatttaca 44994990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 32352847 - 32352951
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | ||||||||||||| |||||||||||       | ||||||||||| | ||||||||||||||||||||||||||||||||    
T  32352847 caacacatttatagggcgt-acataagaaattgtaagcaaataataaaaaa-tgtaaagaaattgcctaatttataggggtttatataagaaattcatag 32352944  T
Q  173 ggattta 179  Q
    |||||||    
T  32352945 ggattta 32352951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 48206852 - 48206960
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||| |  |||||||||||||||||||| |||||||       |||||| |||||||| |||||||||||||||||||||| |||||| ||    
T  48206852 caacacatttataagtgtttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatataag-aattcagag 48206950  T
Q  173 ggatttacat 182  Q
    | ||||||||    
T  48206951 gaatttacat 48206960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 3178702 - 3178809
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||| |||||||||  |||||||| ||||||||||||||||||         |||||||||||| ||||||||||| | ||||||||||||||||||||    
T  3178702 caacatatttataggagtttacatacgaaattgcaagcaaataaaaaaaaaa-ctaaagaaattgcccaatttatagagatttatataagaaattcatag 3178800  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  3178801 ggatttaca 3178809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 8950681 - 8950526
Alignment:
Q  25 atagtggcggagccaggattattgtaaagtccgggcnnnnnnnnntta-caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnn 123  Q
    |||||||||||||||||| ||||||||||| |||||         ||  ||||| ||||||||||  | |||||||||||| ||||||||||||          
T  8950681 atagtggcggagccaggaatattgtaaagttcgggcaaaaaaaaatttgcaacatatttatagggcgt-acataagaaatttcaagcaaataataaaaaa 8950583  T
Q  124 ntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
     | ||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||    
T  8950582 -tgtaaagaaattgcccaatttatagggatttatataagaaattcataggaatttaca 8950526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 22845493 - 22845398
Alignment:
Q  70 ttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaatt 167  Q
    |||| ||| |||||||||| |||| |||| ||||||||||||||||||       ||||||||||||||| |||||||||||||||||||||||||||    
T  22845493 ttacgacatatttataggg-tttatataaaaaattgcaagcaaataataaaaaa-tctaaagaaattgtcaaatttataggggtttatataagaaatt 22845398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 33103742 - 33103835
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaatt 167  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||       | |||| ||||| ||||||||||||||  ||||||||||||||    
T  33103742 caacacatttataaggatttacataagaaattacaagcaaataataaaaaatt-taaataaattatccaatttatagggacttatataagaaatt 33103835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 182
Target Start/End: Complemental strand, 46685903 - 46685804
Alignment:
Q  82 tatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    ||||||| ||| ||||||||||||||| ||||||||       | ||||||||||||| |||||||||| |||||||||||||||| |  ||||||||||    
T  46685903 tataggggtttgcataagaaattgcaaacaaataataaaaaa-tataaagaaattgtcaaatttataggagtttatataagaaatttagggggatttaca 46685805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 5391588 - 5391633
Alignment:
Q  206 cggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||    
T  5391588 cggagcccgggcgagtgcccagggtcgccgggccatagaaccgccc 5391633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 6280534 - 6280393
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntc 126  Q
    ||||||||||||||||||||| ||||||| || |         || |||||||||||||  | ||||||||| |||| |||||||||| ||       ||    
T  6280534 agtggcggagccaggattattataaagtctggacaaaaaaaatttgcaacacatttataaaggtttacataaaaaatggcaagcaaattatcaaaaa-tc 6280436  T
Q  127 taaagaaattgtccaatttataggggtttatataagaaattca 169  Q
    |||| |||||||| ||||||||| |||||||||||||||||||    
T  6280435 taaataaattgtcaaatttatagaggtttatataagaaattca 6280393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 117
Target Start/End: Complemental strand, 19644458 - 19644415
Alignment:
Q  74 aacacatttatagggatttacataagaaattgcaagcaaataat 117  Q
    |||||||||||||||| |||||||||||||||||| ||||||||    
T  19644458 aacacatttatagggaattacataagaaattgcaatcaaataat 19644415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 173
Target Start/End: Original strand, 47889679 - 47889824
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattg-caagcaaataatnnnnnnnt 125  Q
    |||||||||||||| ||||||||||||| |||||         || ||| || ||||||||| ||||||| |||||||| |||| |||||||       |    
T  47889679 agtggcggagccagaattattgtaaagtacgggcaaaaaaatattgcaa-acgtttataggg-tttacattagaaattgtcaagtaaataataaaaaaat 47889776  T
Q  126 ctaaagaaattgtccaatttataggggtttatataagaaattcatagg 173  Q
     ||||||||||| ||||||||||||  |||||||||||||||||||||    
T  47889777 ttaaagaaattgcccaatttataggaatttatataagaaattcatagg 47889824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 36826084 - 36826043
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaat 114  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  36826084 caacacatttataggggtttacataagaaactgcaagcaaat 36826043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 8950508 - 8950456
Alignment:
Q  199 tttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||| || ||||||||| ||||||||||||||||| |||| |||||||||||    
T  8950508 tttggcccagagcccgggcgagtgcccggggtcgccaggccttagaaccgccc 8950456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 13856223 - 13856275
Alignment:
Q  199 tttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||| ||||||||||||  ||||||| ||||||||||||| |||||||||||    
T  13856223 tttggcccggagcccgggcaagtgccctgggtcgccgggccttagaaccgccc 13856275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 44994972 - 44994920
Alignment:
Q  199 tttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||| |||||||||| | |||| ||||||||||||||||| |||||||||||    
T  44994972 tttggcccggagcccgagcgagtacccggggtcgccgggccttagaaccgccc 44994920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 107
Target Start/End: Original strand, 36539722 - 36539750
Alignment:
Q  79 atttatagggatttacataagaaattgca 107  Q
    |||||||||||||||||||||||||||||    
T  36539722 atttatagggatttacataagaaattgca 36539750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 40500332 - 40500292
Alignment:
Q  77 acatttatagggatttacataagaaattgcaagcaaataat 117  Q
    |||||||  ||||||||||||| ||||||||||||||||||    
T  40500332 acatttagtgggatttacataaaaaattgcaagcaaataat 40500292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 33057786 - 33057678
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  33057786 caacacatttatagg-atttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatataagaaattcatag 33057688  T
Q  173 ggatttacat 182  Q
    ||||||||||    
T  33057687 ggatttacat 33057678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 27 - 182
Target Start/End: Complemental strand, 19334736 - 19334581
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnn-t 125  Q
    |||||||||||||||| |||||||||| ||||||         || ||||| |||||||||| |||| |||||||||||||||||||||||        |    
T  19334736 agtggcggagccaggactattgtaaagcccgggcaaaaaaatattgcaacaaatttataggg-tttatataagaaattgcaagcaaataataaaaaaaat 19334638  T
Q  126 ctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  19334637 ctaaagaaattgtccaatttataggggtttatataagaaattcataggtatttacat 19334581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 251
Target Start/End: Original strand, 10576691 - 10576849
Alignment:
Q  92 tacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacatnnnnnnnnn 191  Q
    ||||||||||||||||||||||||||       | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||              
T  10576691 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttacacaagaaattg 10576789  T
Q  192 nnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
           ||||| |||||||||||||||||||||||||||||||| || |||||||||||    
T  10576790 caaaaaatttggcccggagcccgggtgagtgcccggggtcgccggaccttagaaccgccc 10576849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 10334176 - 10334285
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    |||||||||||||||| |||||||||||||||||||||||||| |       ||||||||||||| |||||||||| | |||||||||||||||||| ||    
T  10334176 caacacatttataggggtttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttataagagtttatataagaaattcagag 10334275  T
Q  173 ggatttacat 182  Q
    | ||||||||    
T  10334276 gaatttacat 10334285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 34707116 - 34707292
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  34707116 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 34707213  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||||||||                 ||||| |||||||||||| |||||||||||||||||||| | |||||||||||    
T  34707214 ggatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggtcttagaaccgccc 34707292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 29556067 - 29555961
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||    
T  29556067 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgtccaatttataggggtttatataagaaattcatag 29555970  T
Q  173 ggatttaca 181  Q
    | |||||||    
T  29555969 gaatttaca 29555961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 17303245 - 17303135
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnn-tctaaagaaattgtccaatttataggggtttatataagaaattcata 171  Q
    |||||||||||||| | ||||||||||||||||||||||||||||        ||||||||||||| |||||||| | ||||||||||||||||||||||    
T  17303245 caacacatttatagtggtttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttacaagggtttatataagaaattcata 17303146  T
Q  172 gggatttacat 182  Q
    || ||||||||    
T  17303145 ggaatttacat 17303135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 251
Target Start/End: Complemental strand, 44164871 - 44164695
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  44164871 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 44164774  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
      |||||||                 ||||| |||||||||||| |||||||||||||||||||||| |||||||||||    
T  44164773 aaatttacacaagaaattgcaaaaaatttggcccggagcccgggcgagtgcccggggtcgccgggccttagaaccgccc 44164695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 32876640 - 32876552
Alignment:
Q  92 tacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    ||||||||||||||||||||||||||       | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32876640 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgtccaatttataggggtttatataagaaattcatagggatctaca 32876552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 34259536 - 34259624
Alignment:
Q  92 tacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    ||||||||||||||||||||||||||       | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  34259536 tacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatagggatttaca 34259624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 27 - 181
Target Start/End: Complemental strand, 24320613 - 24320461
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggcnnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntc 126  Q
    |||||||||| ||||| |||||||||| ||||||         || ||||||||||||||||  | |||||||||||||||||||||||||       |     
T  24320613 agtggcggagtcaggaatattgtaaagcccgggcaaaaaaattttgcaacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tg 24320516  T
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||| |||||||    
T  24320515 taaagaaattgcccaatttataggggtttatataagaaattcgtaggaatttaca 24320461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 29981223 - 29981135
Alignment:
Q  92 tacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    ||||||||||||||||||||||||||       | |||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  29981223 tacataagaaattgcaagcaaataataaaaaa-tataaagaaattgtccaatttatagaagtttatataagaaattcatagggatttaca 29981135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 29238271 - 29238165
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | ||||||||||||| |||||||||||       | |||||||||| |||||||| ||||||||||||||||||||||||||    
T  29238271 caacacatttatagggcct-acataagaaattgtaagcaaataataaaaaa-tgtaaagaaattttccaatttttaggggtttatataagaaattcatag 29238174  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  29238173 ggatttaca 29238165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 26284507 - 26284404
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    |||||||||||||||| |||||| ||||||||||||| |||||||       ||||||||||||||||||||||||   |||| ||||||||||||| ||    
T  26284507 caacacatttataggggtttacaaaagaaattgcaagaaaataat-aaaaaatctaaagaaattgtccaatttatactagttt-tataagaaattcagag 26284410  T
Q  173 ggattt 178  Q
    ||||||    
T  26284409 ggattt 26284404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 15017823 - 15017880
Alignment:
Q  125 tctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    |||||||||||||||||||||||| | |||||||||||||||||| ||| ||||||||    
T  15017823 tctaaagaaattgtccaatttatacgcgtttatataagaaattcagaggaatttacat 15017880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 9770682 - 9770753
Alignment:
Q  97 aagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattca 169  Q
    |||||||||||||||||||||       |||||||||||||||||||| |||| |||||||||||||||||||    
T  9770682 aagaaattgcaagcaaataatcaaaag-tctaaagaaattgtccaattcatagtggtttatataagaaattca 9770753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 29238146 - 29238095
Alignment:
Q  200 ttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||| |||||||||||| ||||||||||||| |||||||| |||||||||||    
T  29238146 ttggcccggagcccgggcgagtgcccggggttgccgggccttagaaccgccc 29238095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 34259643 - 34259694
Alignment:
Q  200 ttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||| |||||||||||| |||||||||| ||||||||||| |||||||||||    
T  34259643 ttggcccggagcccgggcgagtgcccggagtcgccgggccttagaaccgccc 34259694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 254
Target Start/End: Complemental strand, 19334563 - 19334509
Alignment:
Q  200 ttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgcccatg 254  Q
    |||||||| | || ||| ||||| |||||||||||||||||||||||||||||||    
T  19334563 ttgggccgaaacctgggggagtgaccggggtcgccgggccatagaaccgcccatg 19334509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 33057650 - 33057618
Alignment:
Q  222 gcccggggtcgccgggccatagaaccgcccatg 254  Q
    |||||||||||||||||||||||||||||||||    
T  33057650 gcccggggtcgccgggccatagaaccgcccatg 33057618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 29555942 - 29555891
Alignment:
Q  200 ttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||| |||||| ||||| |||||||| ||||||| |||||||||||||||||    
T  29555942 ttggcccggaggccgggcgagtgcccagggtcgctgggccatagaaccgccc 29555891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 29981116 - 29981065
Alignment:
Q  200 ttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||| |||||||||||| ||||||||| |||||||||| | |||||||||||    
T  29981116 ttggcccggagcccgggcgagtgcccgaggtcgccgggtcttagaaccgccc 29981065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 42072428 - 42072604
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    |||||||||||||  | ||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||    
T  42072428 caacacatttatattg-tttacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgtccaatttataggggtttatataagaaattcatag 42072525  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||||||||                  |||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  42072526 ggatttacacaagaaattgcaaaaaaattggcccggagcccgggcgagtgcccggggtcgccgggccatagaaccgccc 42072604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 21525358 - 21525464
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||||||||||||||    
T  21525358 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgtccaatttataggggtttatataagaaattcatag 21525455  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  21525456 ggatttaca 21525464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 22324596 - 22324772
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  22324596 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 22324693  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||||||||                 ||||| |||||||||||| ||||||||||||| |||||||| |||||||||||    
T  22324694 ggatttacacaagaaattacaaaaaatttggcccggagcccgggcgagtgcccggggttgccgggccttagaaccgccc 22324772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 73 - 251
Target Start/End: Original strand, 35806794 - 35806970
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    |||||||||||||||| | ||||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  35806794 caacacatttataggg-tgtacataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 35806891  T
Q  173 ggatttacatnnnnnnnnnnnnnnnntttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
     ||||||||                 ||||| |||||||||||  |||||||||||||||||||||| |||||||||||    
T  35806892 agatttacacaagaaattgcaaaaaatttggcccggagcccggccgagtgcccggggtcgccgggccttagaaccgccc 35806970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 26021395 - 26021502
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||  ||||||||||||||||||||||||||||||||||    
T  26021395 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaaatgtaaagaaattacccaatttataggggtttatataagaaattcatag 26021493  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  26021494 ggatttaca 26021502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 42013872 - 42013978
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| |||||||||||| |||||||||||||||||||||    
T  42013872 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tataaagaaattgcccaatttataggagtttatataagaaattcatag 42013969  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  42013970 ggatttaca 42013978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 33934497 - 33934391
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | |||| |||||| ||||||||||||||||||||||||||||||||||    
T  33934497 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tataaaaaaattgcccaatttataggggtttatataagaaattcatag 33934400  T
Q  173 ggatttaca 181  Q
    | |||||||    
T  33934399 gaatttaca 33934391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 21488080 - 21488172
Alignment:
Q  88 gatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    ||||||||||||||||||||||||| ||||       ||||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||||    
T  21488080 gatttacataagaaattgcaagcaa-taataaaaaaatctaaagaaattgtccaatttatcggggtttctataagaaattcaaaggaatttaca 21488172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 90 - 179
Target Start/End: Original strand, 24065289 - 24065377
Alignment:
Q  90 tttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggattta 179  Q
    ||||||||||||||||||||||||||||        |||||||||||| |||||||||||| ||||||||||||||||||||| ||||||    
T  24065289 tttacataagaaattgcaagcaaataataaaaaag-ctaaagaaattgcccaatttataggagtttatataagaaattcatagagattta 24065377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 16523156 - 16523213
Alignment:
Q  125 tctaaagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    ||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  16523156 tctaaagaagttgcccaatttatagggatttatataagaaattcatagggatttacat 16523213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 10112045 - 10112154
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||| |||||||||| |||||||||||||||||||  |||||||       |  ||||||||||||||||||||| | |||||||||||||||| | ||    
T  10112045 caacatatttataggggtttacataagaaattgcaaataaataatcaaaaaattaaaagaaattgtccaatttataagagtttatataagaaattaagag 10112144  T
Q  173 ggatttacat 182  Q
    | ||||||||    
T  10112145 gaatttacat 10112154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 73 - 171
Target Start/End: Original strand, 19334782 - 19334879
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcata 171  Q
    ||||| |||||||||| || ||||||||||||| |||||||||||       | ||||||||||||| ||||||||| ||||||||||| |||||||||    
T  19334782 caacatatttataggggtt-acataagaaattgtaagcaaataataaaacaatttaaagaaattgtctaatttatagaggtttatataaaaaattcata 19334879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 77 - 182
Target Start/End: Complemental strand, 43282977 - 43282872
Alignment:
Q  77 acatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatagggat 176  Q
    ||||||||||  ||||||||||||||| |||||||||||||       ||||| ||||||  ||||||||||||| ||||||||| ||||||| | | ||    
T  43282977 acatttatagatatttacataagaaatagcaagcaaataataaaaatttctaatgaaattacccaatttatagggatttatataataaattcagaagaat 43282878  T
Q  177 ttacat 182  Q
    ||||||    
T  43282877 ttacat 43282872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 16819105 - 16819007
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnnt--ctaaagaaattgtccaatttataggggtttatataagaaattca 169  Q
    |||||||||||||||| |||| |||| ||||||||||||||||||       |   || |||||||  |||||||||||||||||||||||||||||||    
T  16819105 caacacatttataggggtttatataaaaaattgcaagcaaataataaaatactagatagagaaattacccaatttataggggtttatataagaaattca 16819007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 251
Target Start/End: Complemental strand, 33934365 - 33934321
Alignment:
Q  207 ggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||||||||| |||||||||||||||||||||| || ||||||||    
T  33934365 ggagcccgggcgagtgcccggggtcgccgggccttaaaaccgccc 33934321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 34697519 - 34697475
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataat 117  Q
    ||||| ||||||| | |||||||||||||||||||||||||||||    
T  34697519 caacatatttataagaatttacataagaaattgcaagcaaataat 34697475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 21525488 - 21525534
Alignment:
Q  205 ccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||||||| || |||||||||||||| ||||||| |||||||||||    
T  21525488 ccggagccctggcgagtgcccggggtcaccgggccttagaaccgccc 21525534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 2824311 - 2824270
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaat 114  Q
    ||||||||||| |||  |||||||||||||||||||||||||    
T  2824311 caacacatttaaaggtgtttacataagaaattgcaagcaaat 2824270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 16591449 - 16591396
Alignment:
Q  129 aagaaattgtccaatttataggggtttatataagaaattcatagggatttacat 182  Q
    ||||||||| ||||||||||| | |||||||||||||||| |||  ||||||||    
T  16591449 aagaaattgcccaatttatagtgatttatataagaaattcttagaaatttacat 16591396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 42014016 - 42014053
Alignment:
Q  219 agtgcccggggtcgccgggccatagaaccgcccatgac 256  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  42014016 agtgcccggggtcgccgggccttagaaccgcccctgac 42014053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 2271245 - 2271289
Alignment:
Q  125 tctaaagaaattgtccaatttataggggtttatataagaaattca 169  Q
    ||||||||||||  | ||| |||||||||||||||||||||||||    
T  2271245 tctaaagaaattacctaatatataggggtttatataagaaattca 2271289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 9231982 - 9231876
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||||||||||||||||||||||||    
T  9231982 caacacatttatagggcat-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggggtttatataagaaattcatag 9231885  T
Q  173 ggatttaca 181  Q
     ||||||||    
T  9231884 agatttaca 9231876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 13103246 - 13103139
Alignment:
Q  75 acacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcataggg 174  Q
    |||||||||||||  ||||||| ||||||||||||||||||||       ||||||||||||| ||||||||||  ||||||||||||||||||| |||     
T  13103246 acacatttataggtgtttacattagaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttataaaggtttatataagaaattcagagga 13103147  T
Q  175 atttacat 182  Q
    ||||||||    
T  13103146 atttacat 13103139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 14309926 - 14309820
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  14309926 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttatagggatttatataagaaattcatag 14309829  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  14309828 ggatttaca 14309820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 181
Target Start/End: Complemental strand, 24694779 - 24694673
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||||  | |||||||||||||||||||||||||       | ||||||||||| |||||||||||| |||||||||||||||||||||    
T  24694779 caacacatttatagggcgt-acataagaaattgcaagcaaataataaaaaa-tgtaaagaaattgcccaatttataggagtttatataagaaattcatag 24694682  T
Q  173 ggatttaca 181  Q
    |||||||||    
T  24694681 ggatttaca 24694673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 27863698 - 27863806
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||||   ||||||||||||||||||| ||||||||       |||||||||||||||||||||||| |||||||||||||||||||| ||    
T  27863698 caacacatttatagatgtttacataagaaattgcaaacaaataataaaaaa-tctaaagaaattgtccaatttataagggtttatataagaaattcagag 27863796  T
Q  173 ggatttacat 182  Q
      ||||||||    
T  27863797 aaatttacat 27863806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 28750780 - 28750671
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||| |  ||||||||||||||| ||||||||||||         ||||||||||| ||||||||||||||||||||||||||||||| |     
T  28750780 caacacatttataagagtttacataagaaattacaagcaaataatcaaaaaaattaaagaaattgcccaatttataggggtttatataagaaattcagaa 28750681  T
Q  173 ggatttacat 182  Q
    | ||||||||    
T  28750680 gaatttacat 28750671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 1728009 - 1727955
Alignment:
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  1728009 taaagaaattgctcaatttataggggtttatataagaaattcatagggatttaca 1727955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 11212670 - 11212765
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattca 169  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||       ||||||||||||| ||||||||||||| |||||| || |||||||    
T  11212670 caacacatttataggaatttacataagaaattacaagcaaataat-taaaaatctaaagaaattgcccaatttatagggatttatagaaaaaattca 11212765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 13627592 - 13627646
Alignment:
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  13627592 taaagaaattgctcaatttataggggtttatataagaaattcatagggatttaca 13627646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 73 - 182
Target Start/End: Original strand, 34103684 - 34103792
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||| |  | ||||||||||||||||||| ||||||||       ||||||||||||  |||||||||| |||||||||||||||||||| ||    
T  34103684 caacacatttacaaaggtttacataagaaattgcaaacaaataataaaaaa-tctaaagaaatttcccaatttatacgggtttatataagaaattcagag 34103782  T
Q  173 ggatttacat 182  Q
    | ||||||||    
T  34103783 gaatttacat 34103792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 11279539 - 11279583
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataat 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||    
T  11279539 caacacatttatagagatttacataagaaattgcaagcaaataat 11279583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 24497646 - 24497596
Alignment:
Q  131 gaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| |||||||    
T  24497646 gaaattgcccaatttataggggtttatataagaaattcagaggaatttaca 24497596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 9231857 - 9231806
Alignment:
Q  200 ttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    |||| |||||||||||| |||||||||||||||||| ||| |||||||||||    
T  9231857 ttggcccggagcccgggcgagtgcccggggtcgccgagccttagaaccgccc 9231806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 24500833 - 24500786
Alignment:
Q  70 ttacaacacatttatagggatttacataagaaattgcaagcaaataat 117  Q
    |||||||||||||||| || |||||||| |||||||||||||||||||    
T  24500833 ttacaacacatttataagggtttacatatgaaattgcaagcaaataat 24500786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 34383411 - 34383361
Alignment:
Q  203 ggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgcccat 253  Q
    |||||||||||||| || | |||||||||||| ||||||||||||||||||    
T  34383411 ggccggagcccgggcgaatacccggggtcgccaggccatagaaccgcccat 34383361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 8412758 - 8412717
Alignment:
Q  126 ctaaagaaattgtccaatttataggggtttatataagaaatt 167  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  8412758 ctaaagaaattgcccaatttataggcgtttatataagaaatt 8412717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 11084563 - 11084653
Alignment:
Q  27 agtggcggagccaggattattgtaaagtccgggc-nnnnnnnnnttacaacacatttatagggatttacataagaaattgcaagcaaataat 117  Q
    |||||||||||||||| |||||||||||||||||          || ||||||||||||||||   ||||||||||||||||||||||||||    
T  11084563 agtggcggagccaggaatattgtaaagtccgggcaaaaaaaaatttgcaacacatttataggg-cgtacataagaaattgcaagcaaataat 11084653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 24694655 - 24694603
Alignment:
Q  199 tttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||| |||||||||||| |||||||| |||| |||||||| |||||||||||    
T  24694655 tttggcccggagcccgggcgagtgcccagggttgccgggccttagaaccgccc 24694603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 11084664 - 11084696
Alignment:
Q  149 ggggtttatataagaaattcatagggatttaca 181  Q
    ||||||||||||||||||||||||| |||||||    
T  11084664 ggggtttatataagaaattcataggaatttaca 11084696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 251
Target Start/End: Original strand, 13627664 - 13627716
Alignment:
Q  199 tttgggccggagcccgggtgagtgcccggggtcgccgggccatagaaccgccc 251  Q
    ||||| |||||||||||  ||||||  |||||||||||||| |||||||||||    
T  13627664 tttggcccggagcccggacgagtgcttggggtcgccgggccttagaaccgccc 13627716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 70 - 182
Target Start/End: Complemental strand, 34585 - 34473
Alignment:
Q  70 ttacaacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattca 169  Q
    ||||||||| ||||||||  |||||||||||||||| |||||||||||       |||||||||| |||||||||||||| | |||||||||  ||||||    
T  34585 ttacaacacgtttataggagtttacataagaaattgtaagcaaataatcaaaaaatctaaagaaactgtccaatttatagagatttatataaagaattca 34486  T
Q  170 tagggatttacat 182  Q
     ||||||||||||    
T  34485 gagggatttacat 34473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 20953 - 20852
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataatnnnnnnntctaaagaaattgtccaatttataggggtttatataagaaattcatag 172  Q
    ||||||||||||| | ||||||||||||||||||||||||| |||        ||||| |||||||||||||||||| | ||||||||||||||||| ||    
T  20953 caacacatttatacgaatttacataagaaattgcaagcaaaaaat--------ctaaaaaaattgtccaatttatagagctttatataagaaattcagag 20862  T
Q  173 ggatttacat 182  Q
    | ||||||||    
T  20861 gaatttacat 20852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Original strand, 54571 - 54625
Alignment:
Q  127 taaagaaattgtccaatttataggggtttatataagaaattcatagggatttaca 181  Q
    ||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||    
T  54571 taaagaaattgtccaatttatagggatttatataaaaaattcataggaatttaca 54625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 54488 - 54531
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaataat 117  Q
    ||||||||||||||||  | |||||||||||||||||||||||||    
T  54488 caacacatttatagggcgt-acataagaaattgcaagcaaataat 54531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 85509 - 85550
Alignment:
Q  73 caacacatttatagggatttacataagaaattgcaagcaaat 114  Q
    ||||| |||||||| | |||||||||||||||||||||||||    
T  85509 caacatatttatagaggtttacataagaaattgcaagcaaat 85550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 85552 - 85592
Alignment:
Q  127 taaagaaattgtccaatttataggggtttatataagaaatt 167  Q
    ||||||||||||||||||||||||| ||| ||||| |||||    
T  85552 taaagaaattgtccaatttatagggatttttataaaaaatt 85592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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