View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3040-Insertion-3 (Length: 513)
Name: NF3040-Insertion-3
Description: NF3040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3040-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 8 - 268
Target Start/End: Original strand, 363501 - 363761
Alignment:
| Q |
8 |
catcttaatatgattctgcttaaaaatattttttattggaaaaactattattgattatgagaaattcataattaactacaacttctaaaaatatgcttat |
107 |
Q |
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| T |
363501 |
catcttaatatgattctgcttaaaaatattttttattggaaaaactattattgattatgagaaattcataattaactacaacttttaaaaatatgcttat |
363600 |
T |
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| Q |
108 |
atcatgcatcgagaagttctagtattttcccatcttggtcaaagctgattattttattatatttggcatactcaattattaagaagcatgtccgaattgt |
207 |
Q |
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| T |
363601 |
atcatgcatcgagaagttctagtattttcccatcttggtcaaagctgattattttattatatttggcatactcaattattaagaagcatgtccgaattgt |
363700 |
T |
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| Q |
208 |
gtggagcttattttcattccttaatcgattatgttacttggaagaattgattatgatgcaa |
268 |
Q |
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| T |
363701 |
gtggagcttattttaattccttaatcgattatgttacttggaagaattgattatgatgcaa |
363761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 362 - 509
Target Start/End: Original strand, 365019 - 365166
Alignment:
| Q |
362 |
cttctacggagaagtctgccaaaagctcagacttaaccttgaatggcgtccgagcttgcccaaatattcacacataagttgcttttctaattacatgttg |
461 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
365019 |
cttctacggagaagtctgccaaaagctcagacttaatcttgaatggcatccgagcttgcccaaatattcacacataagttgtttttctaattacatgttg |
365118 |
T |
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| Q |
462 |
gaaatattaagaatttgctcatttaaattaaaaatctccaccaacaaa |
509 |
Q |
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| T |
365119 |
gaaatattaagaatttgctcatttaaattaaaaatcttcaccaacaaa |
365166 |
T |
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