View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3040-Insertion-5 (Length: 716)

Name: NF3040-Insertion-5
Description: NF3040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3040-Insertion-5
NF3040-Insertion-5
[»] chr2 (4 HSPs)
chr2 (494-716)||(14217995-14218215)
chr2 (8-183)||(14217551-14217723)
chr2 (352-427)||(14217853-14217928)
chr2 (222-259)||(14217729-14217766)
[»] chr1 (2 HSPs)
chr1 (228-282)||(36475971-36476025)
chr1 (228-282)||(47445069-47445123)
[»] chr6 (1 HSPs)
chr6 (228-281)||(6008723-6008776)
[»] chr3 (1 HSPs)
chr3 (228-281)||(35942777-35942830)
[»] chr7 (1 HSPs)
chr7 (108-152)||(3986789-3986833)
[»] chr4 (1 HSPs)
chr4 (108-152)||(21226358-21226402)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 4e-98; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 494 - 716
Target Start/End: Original strand, 14217995 - 14218215
Alignment:
Q  494 tactagaatatccttttcagataagtttttaggattaacatacatccaacgatcttcttttgcttgggagaatttgtatgtatatgtttggattttgtta 593  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14217995 tactagaatatccttttcagataagtttttaggattaatatacatccaacgatcttcttttgcttgggataatttgtatgtatatgtttggattttgtta 14218094  T
Q  594 agagttattaattgtgaggctgtaatgaaaagaacatgacaattgggaacaaaagagtactattcatcactgcaaaggacgggtgtgtttcrtacattga 693  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||   || ||||||| ||||||||    
T  14218095 agagttattaattgcgaggctgtaatgaaaagaacatgacaattgggaac--aagagtactattcatcactgcaaagggatggggtgtttcatacattga 14218192  T
Q  694 cttggccccctaaaatttgtctc 716  Q
    |||||||||||||||||||||||    
T  14218193 cttggccccctaaaatttgtctc 14218215  T

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Target: chr2; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 8 - 183
Target Start/End: Original strand, 14217551 - 14217723
Alignment:
Q  8 acgggtgcaaattcatcaccaccagtaccacattactactataaaagtattgaaaataaacagactattttcttcttttcattttaatgttttttatata 107  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14217551 acgggtgcaaattcatcaccaccagtaccacattact---ataaaagtattgaaaataaacagactattttcttcttttcattttaatgttttttatcta 14217647  T
Q  108 attattactcctccaccatcatcaacaacaataacaccacataagctgatcaatccacgtagcataaggttcagtc 183  Q
    |||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||    
T  14217648 attattactcctccaccatcatcaacaataataacaccacctaaactgatcaatccacgtagcataaggttcagtc 14217723  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 352 - 427
Target Start/End: Original strand, 14217853 - 14217928
Alignment:
Q  352 gcttattcactaatcaaatatttacgtagacttttaccaccaacttaactatacttacaagaccaataaaaataca 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14217853 gcttattcactaatcaaatatttacgtagacttttaccaccaacttaactatacttacaagacaaataaaaataca 14217928  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 14217729 - 14217766
Alignment:
Q  222 atggggtttaacagccaaaataaatggaggggtgtgat 259  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  14217729 atggggtttaacaaccaaaataaatggagggatgtgat 14217766  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 36475971 - 36476025
Alignment:
Q  228 tttaacagccaaaataaatggaggggtgtgattaactaatgtttaacaatttcat 282  Q
    |||||||||||||| ||||||||||| || ||| ||||| |||||||||||||||    
T  36475971 tttaacagccaaaacaaatggaggggggtaattgactaacgtttaacaatttcat 36476025  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 228 - 282
Target Start/End: Complemental strand, 47445123 - 47445069
Alignment:
Q  228 tttaacagccaaaataaatggaggggtgtgattaactaatgtttaacaatttcat 282  Q
    |||||||||||||||||| ||||||| || ||| ||||| |||| ||||||||||    
T  47445123 tttaacagccaaaataaacggaggggggtaattgactaacgtttgacaatttcat 47445069  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 6008776 - 6008723
Alignment:
Q  228 tttaacagccaaaataaatggaggggtgtgattaactaatgtttaacaatttca 281  Q
    |||||||||||||| ||||||||||| |||||| ||||| ||||  ||||||||    
T  6008776 tttaacagccaaaacaaatggaggggggtgattgactaacgtttgtcaatttca 6008723  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 35942777 - 35942830
Alignment:
Q  228 tttaacagccaaaataaatggaggggtgtgattaactaatgtttaacaatttca 281  Q
    ||||||| |||||| ||||||||||| || ||| ||||| ||||||||||||||    
T  35942777 tttaacaaccaaaacaaatggaggggggtaattgactaacgtttaacaatttca 35942830  T

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Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Original strand, 3986789 - 3986833
Alignment:
Q  108 attattactcctccaccatcatcaacaacaataacaccacataag 152  Q
    |||| ||| ||||||||| ||||||||||||||||||||| ||||    
T  3986789 attactacacctccaccaccatcaacaacaataacaccacctaag 3986833  T

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Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 108 - 152
Target Start/End: Complemental strand, 21226402 - 21226358
Alignment:
Q  108 attattactcctccaccatcatcaacaacaataacaccacataag 152  Q
    |||| ||| ||||||||| ||||||||||||||||||||| ||||    
T  21226402 attactacacctccaccaccatcaacaacaataacaccacctaag 21226358  T

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