View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3040-Insertion-6 (Length: 905)
Name: NF3040-Insertion-6
Description: NF3040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3040-Insertion-6 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 464
Target Start/End: Complemental strand, 36209004 - 36208549
Alignment:
| Q |
7 |
agctatttggtgttacacttcaccaagagttaatgatgcagttggtgctttacatgataagttgtattcttttgatgcaaaaccttattgggactcaaga |
106 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36209004 |
agctatctggtgttacacttcaccaagagttaatgatgcagttggtgctttacatgataagttgtattcgtttgatgcaaaaccttattgggactcaaga |
36208905 |
T |
|
| Q |
107 |
cgtgaattacttgaggataattatagaaacattgattttccatttgatcctgtggaaggagttgatcatacaggaccgtttgaatttgaggccgagactg |
206 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
36208904 |
cgtgaattacttgaggataattatagaaacattgattttccatttgatcctgtggaaggggttgatcatacaggaccgtttgagtttgaggccgagactg |
36208805 |
T |
|
| Q |
207 |
tgatggatttggatgacttcttgaattatataagatcaaggtcggcttatcagtcatcaaagaataaaggggttgagcttcttacggatgatgttattaa |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
36208804 |
tgatggatttggatgacttcttgaattatataagatcaaggtcagcttatcagtcatcaaagaataaaggggttgagcttcttactgatgatgttattga |
36208705 |
T |
|
| Q |
307 |
aaaattcaaacttgcttggggagaagatggaaaaaagattgccgagtttcaagtatatttgaggattggaagagtaagggatgcttgaaaacatgcaaat |
406 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |
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| T |
36208704 |
aaaattcaaacttgcttggggagaagatggaaaaaagattgccaagtttcaagtatatctgagaattggaagagtaagggatgcttgaaaatatgcaaat |
36208605 |
T |
|
| Q |
407 |
gattgtaannnnnnncttatccctttgagggtggtgtgataagaaacatcgtttcttt |
464 |
Q |
| |
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||||||| |||||||||||||||||||||||| ||| |||||| ||||||| |
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|
| T |
36208604 |
gattgta--ctttttcttatccctttgagggtggtgtgacaaggaacatcttttcttt |
36208549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 605
Target Start/End: Complemental strand, 36205917 - 36205320
Alignment:
| Q |
8 |
gctatttggtgttacacttcaccaagagttaatgatgcagttggtgctttacatgataagttgtattcttttgatgcaaaaccttattgggactcaa-ga |
106 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| | ||||||||||||||||||||| |||||||| ||| || |
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|
| T |
36205917 |
gctacttggtgttacaattcaccaagagttaatgatgcagttgatgctttgcatgataaggtatattcttttgatgcaaaacctcattgggacccaaaga |
36205818 |
T |
|
| Q |
107 |
cgtgaattacttgaggataattatagaaacattgattttccatttgatcctgtggaaggagttgatcatacaggaccgtttgaatttgaggccgagactg |
206 |
Q |
| |
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||||||||| ||||||| |||||| || | ||||||||||||||| || || ||||||||||||||||||||||| ||||| |||| ||| ||||||| |
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|
| T |
36205817 |
cgtgaattagttgaggaaaattatgaaaccgttgattttccatttgggcccgttgaaggagttgatcatacaggaccatttgagtttgtggcagagactg |
36205718 |
T |
|
| Q |
207 |
tgatggatttggatgacttcttgaattatataagatcaaggtcggcttatcagtcatcaaagaataaaggggttgagcttcttacggatgatgttattaa |
306 |
Q |
| |
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|||||||||| ||||| ||||||| |||||||||||||||||| | |||||| ||||||||||||| |||||||| || |||| ||| ||||||||| | |
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|
| T |
36205717 |
tgatggattttgatgatttcttgacttatataagatcaaggtcatcatatcagacatcaaagaataacggggttgaactgcttaaggaggatgttattga |
36205618 |
T |
|
| Q |
307 |
aaaattcaaacttgcttggggagaagatggaaaaaagattgccgagtttcaagtatatttgaggattggaagagtaagggatgcttgaaaacatgcaaat |
406 |
Q |
| |
|
||| || ||||||||| | || |||||||| |||||| || | ||||||||||||||||||| ||||||||||||| |||||||||||| |||||||| |
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|
| T |
36205617 |
aaattttaaacttgctcgtggtgaagatggccaaaagactgtcaagtttcaagtatatttgagaattggaagagtaatggatgcttgaaattatgcaaat |
36205518 |
T |
|
| Q |
407 |
gattgtaannnnnnncttatccctttgagggtggtgtgataagaaacatcgtttctttaatgattaaataagcttgcttcgttgttactacttaaataat |
506 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| || |||| | | |||||||| |||||| |
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|
| T |
36205517 |
gattgta--cttcttcttatccctttgagggtggtgtgataagaaacatcttttctttattgattgaataagtttacttcatggatactactt-aataat |
36205421 |
T |
|
| Q |
507 |
taagctggcttttgagaatgattgaaagcagaaat--tccggaggagaaaacctagtcaaaaatctctgatgtgtacttgtagataattgattgagtctt |
604 |
Q |
| |
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||| || ||| |||||||||||||| | |||| || ||||||||||| |||| ||||| ||| |||||||||| | ||||||||||||| ||| |
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|
| T |
36205420 |
taaactagctacagagaatgattgaaaacgtaaattctctggaggagaaaaagtagtttgaaatccctggtgtgtacttgaaaataattgattgagactt |
36205321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 492 - 697
Target Start/End: Complemental strand, 36208546 - 36208341
Alignment:
| Q |
492 |
tactacttaaataattaagctggcttttgagaatgattgaaagcagaaattccggaggagaaaacctagtcaaaaatctctgatgtgtacttgtagataa |
591 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| ||||| ||| | ||| ||||||||||||||||| |
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|
| T |
36208546 |
tactacttaaataattaagctagcttttgagaatgattgaaagcagatattccagaggagaaaaactagtttgaaacccctggtgtgtacttgtagataa |
36208447 |
T |
|
| Q |
592 |
ttgattgagtctttctattgtaacttggtatgacgaatttaagnnnnnnnnngtttcaatgttacaacaaatttatcataaaaatgatac-aaattgaac |
690 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||| ||| ||||| ||| |
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|
| T |
36208446 |
ttgattgagcctttctattgtaacttggtatgacgaatttaag-tattttatgtttcaatgtttcaacaaatttctcataaaaatgctacaaaattaaac |
36208348 |
T |
|
| Q |
691 |
agttatg |
697 |
Q |
| |
|
||||||| |
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|
| T |
36208347 |
agttatg |
36208341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 78 - 381
Target Start/End: Original strand, 35404773 - 35405076
Alignment:
| Q |
78 |
ttgatgcaaaaccttattgggactcaagacgtgaattacttgaggataattatagaaacattgattttccatttgatcctgtggaaggagttgatcatac |
177 |
Q |
| |
|
||||| |||||||||||||||| ||| || ||||| ||||||| |||||||||| |||||||||||||||||| | ||||| ||||||||||||| |
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|
| T |
35404773 |
ttgattcaaaaccttattgggattcagcgtgtaaattagttgaggacaattatagaagcattgattttccatttgaggcggtggatggagttgatcatag |
35404872 |
T |
|
| Q |
178 |
aggaccgtttgaatttgaggccgagactgtgatggatttggatgacttcttgaattatataagatcaaggtcggcttatcagtcatcaaagaataaaggg |
277 |
Q |
| |
|
|||||| ||||| |||| | | |||| ||||| ||| |||| || || | |||||||| |||| |||| ||||||||| || ||||| | || || |
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|
| T |
35404873 |
aggaccatttgagtttgtgacagagatattgatgagttttgatggtttgttaacttatataaaatcatggtcagcttatcagacagcaaaggagaagggt |
35404972 |
T |
|
| Q |
278 |
gttgagcttcttacggatgatgttattaaaaaattcaaacttgcttggggagaagatggaaaaaagattgccgagtttcaagtatatttgaggattggaa |
377 |
Q |
| |
|
|| ||||||||| || || || || ||||||| || ||||||||||| |||||||| | || | |||| |||||| ||| ||| |||| ||||||| |
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|
| T |
35404973 |
gtggagcttcttggtgaggacgtagttgaaaaatttaagcttgcttggggtgaagatggccacaaaactgccaagtttccagtttatctgagaattggaa |
35405072 |
T |
|
| Q |
378 |
gagt |
381 |
Q |
| |
|
|||| |
|
|
| T |
35405073 |
gagt |
35405076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 128 - 381
Target Start/End: Original strand, 35399894 - 35400147
Alignment:
| Q |
128 |
tatagaaacattgattttccatttgatcctgtggaaggagttgatcatacaggaccgtttgaatttgaggccgagactgtgatggatttggatgacttct |
227 |
Q |
| |
|
||||||| |||||||||||||||| | | ||||| |||||||||||||||||||| ||||| |||| | | || || | ||| ||| |||| || | |
|
|
| T |
35399894 |
tatagaagcattgattttccatttcaggcagtggatggagttgatcatacaggaccatttgagtttgtgacagaaacattcatgagttttgatggtttgt |
35399993 |
T |
|
| Q |
228 |
tgaattatataagatcaaggtcggcttatcagtcatcaaagaataaaggggttgagcttcttacggatgatgttattaaaaaattcaaacttgcttgggg |
327 |
Q |
| |
|
| | ||||||| |||| |||| ||||||||| || ||||||| || || || ||||||||| || || || || ||||||| || ||||||||||| |
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|
| T |
35399994 |
taacatatataaaatcatggtcagcttatcagacagcaaagaagaagggtgtggagcttcttggtgaggacgtagttgaaaaatttaagcttgcttgggg |
35400093 |
T |
|
| Q |
328 |
agaagatggaaaaaagattgccgagtttcaagtatatttgaggattggaagagt |
381 |
Q |
| |
|
|||||||| | || | |||| |||||| ||| ||| |||| ||||||||||| |
|
|
| T |
35400094 |
tgaagatggccacaaaactgccaagtttccagtttatctgagaattggaagagt |
35400147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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