View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3040-Insertion-7 (Length: 918)
Name: NF3040-Insertion-7
Description: NF3040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3040-Insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 758; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 8 - 909
Target Start/End: Original strand, 510789 - 511689
Alignment:
| Q |
8 |
aaaaccttagcattttactctcccatgtgaggtttgtgaaactcattcatttgtatttaagttcacttacaaaaaattaacctccaaaaaccctaacact |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
510789 |
aaaaccttagcattttactctcccatgtgaggtttgtgaaactcat-catttttatttaagttcacctacaaaaaattaaccaccaaaaaccctaacact |
510887 |
T |
|
| Q |
108 |
aattacctatctctcatagaaatcgccattgatgctcatcaaacccttgatcatgaacaactccctaatgatcaagaacattgtcacgacctcgatacac |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
510888 |
aattacctatctctcatagaaatcgccattgatgctcatcaaacccttgatcatgaacaactccctaatgatcaagaacattgtcacgacctcgacacac |
510987 |
T |
|
| Q |
208 |
ttaagataacattnnnnnnn-cttgagttaaatagctctcacaaaatcatagcgaagaatcacgaaatgtacttaatatatcatttcatttccaaccaga |
306 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
510988 |
ttaagataacattaaaaaaaacttgagttaaatagctctcacaaaatcatagcgaagaatcacgaaatgtacttaatatatcatttcatttccaaccaga |
511087 |
T |
|
| Q |
307 |
gtgtttggctcatgacgaggttcaacaaaaatatggtaagatgaaaggatagtaagaacaaatccatattacaaatcaaagaagaaaatttaatcaaatt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
511088 |
gtgtttggctcatgacgaggttcaacaaaaatatggtaagatgaaaggatagtaagaacaaatccatattacaaatcaaagaagaaaatttaatcaaatt |
511187 |
T |
|
| Q |
407 |
tgagagcataaaatgttacaaaacaaatttaggctgattttctgggtctcataatttgacactgatctgatgccttcaaggttgctaacagtccatgcag |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
511188 |
tgagagcataaaatgttacaaaacaaatttaggctgattttctgggtctcataatttgacactgatctgatgccttcaaggttgctaacagtccatgcag |
511287 |
T |
|
| Q |
507 |
caactatgtcctannnnnnnaattcagttcaatacctgcacaaattcaacataacccactaaagaatgtcaaacttaaataagggaaaattcaagcttgc |
606 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
511288 |
caactatgtcctatttttttaattcagttcaatacctgcacaaattcaacataacccacaaaagaatgtcaaacttaaataagggaaaattcaagcttgc |
511387 |
T |
|
| Q |
607 |
ttgagattaacaataactgttttggagagttatcatgagtgtattataattatcaagttgttaatttgccttttactcgcctctaacaagatatcctatg |
706 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
511388 |
ttgagattaacaataactgttttggagagttatcatgagtgtattataattatcaagttgtgaatttgccttttactcgcctctaacatgatatcctatg |
511487 |
T |
|
| Q |
707 |
cctacttattaatacgtctctcatctaattgatattacatgttttgtcatgtctacatgtttcatgtgttaacatgtctttagatattctcaatagtcat |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
511488 |
cctacttattaatacgtctctcatctaattgatattacatgctttgtcatgtctacatgtttcatgtgttaacctgtctttagatattctcaatagtcat |
511587 |
T |
|
| Q |
807 |
atttgtaannnnnnnnnnnntttctgttttacgcagttaaaaagaatg-tgtgagtttgtttctaagctaatcattttttagcgactttgaatttgtatt |
905 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
511588 |
atttgtaaatatatatata--ttctgttttacgcagttaaaaagaatgttgtgagtttgtttctaagctaatcattttttagcgactttgaatttgtatt |
511685 |
T |
|
| Q |
906 |
gtat |
909 |
Q |
| |
|
|||| |
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|
| T |
511686 |
gtat |
511689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 8 - 672
Target Start/End: Complemental strand, 583124 - 582460
Alignment:
| Q |
8 |
aaaaccttagcattttactctcccatgtgaggtttgtgaaactcattcatttgtatttaagttcacttacaaaaaattaacctccaaaaaccctaacact |
107 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||| || ||||||||||||| ||||||||| |||||| |
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| T |
583124 |
aaaaccttagcattttactctcccatatgaggtttgtgaaactcat-catctgtatttaagttcacctaaaaaaaattaacctgcaaaaaccccaacact |
583026 |
T |
|
| Q |
108 |
aattacctatctctcatagaaatcgccattgatgctcatcaaacccttgatcatgaa----caactccctaatgatcaagaacattgtcacgacctcgat |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
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| T |
583025 |
aattacctatctctcatagaaatcgccattgatgctcatcaaacccttgatcatgaatgaacaactccctaatgatcaagaacattgtcacaacctcgac |
582926 |
T |
|
| Q |
204 |
acacttaagataacattnnnnnnncttgagttaaatagctctcacaaaatcatagcgaagaatcacgaaatgtacttaatatatcatttcatttccaacc |
303 |
Q |
| |
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|||||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
582925 |
acacttaagataaccttaaaaaa-cttgagttaaatagctctcacaaaatcatagcaaagaaccacgaaatgtacttaatatatcatttcatttccaacc |
582827 |
T |
|
| Q |
304 |
agagtgtttggctcatgacgaggttcaacaaaaatatggtaagatgaaaggatagtaagaacaaatccatattacaaatcaaagaagaaaatttaatcaa |
403 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||||| |
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|
| T |
582826 |
agagggtttagctcatgacgaggttcaacaaaaatatggtaagatgaaagaatagtatgaacagatccatattacaaatcaaagaagaaaattaaatcaa |
582727 |
T |
|
| Q |
404 |
atttgagagcataaaatgttacaaaacaaatttaggctgattttctgggtctcataatttgacactgatctgatgccttcaaggttgctaacagtccatg |
503 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| |||||| ||||| || ||||||||||||||||||||| |||||| |
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| T |
582726 |
atttgagatcataaaatgttacaaaacaaatttaggttgattttctggatctcacaatttggcactggtcatatgccttcaaggttgctaacactccatg |
582627 |
T |
|
| Q |
504 |
cagcaactatgtcctannnnnnnaattcagttcaatacctgcacaaattcaacataacccactaaagaatgtcaaacttaaataagggaaaattcaagct |
603 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| || |||||||||||| |
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|
| T |
582626 |
tagcaactatgttaga-ttttttaattcagttcaatacctgcacaaaatcaacataacccacaaaagaatgtcaaacttaaat-agcaaaaattcaagct |
582529 |
T |
|
| Q |
604 |
tgcttgagattaacaataactgttttggagagttatcatgagtgtattataattatcaagttgttaatt |
672 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| |
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|
| T |
582528 |
tgcttgggattgacaataactgttttggagagttatcattagtgtattctaattatcaagttgtgaatt |
582460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 665 - 701
Target Start/End: Complemental strand, 582452 - 582416
Alignment:
| Q |
665 |
tgttaatttgccttttactcgcctctaacaagatatc |
701 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
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|
| T |
582452 |
tgttaatttgccttttactcgcctctaacatgatatc |
582416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 881 - 911
Target Start/End: Original strand, 56062369 - 56062399
Alignment:
| Q |
881 |
tttttagcgactttgaatttgtattgtatga |
911 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
56062369 |
tttttagcgactttgaatttgtattgtatga |
56062399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 881 - 917
Target Start/End: Original strand, 42781396 - 42781433
Alignment:
| Q |
881 |
tttttagcgactttgaatttgtattgtat-gatgcact |
917 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
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|
| T |
42781396 |
tttttagcgactttgaatttgtattgtatcgatgcact |
42781433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 880 - 909
Target Start/End: Original strand, 8737911 - 8737940
Alignment:
| Q |
880 |
ttttttagcgactttgaatttgtattgtat |
909 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
8737911 |
ttttttagcgactttgaatttgtattgtat |
8737940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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