View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3040-Insertion-8 (Length: 303)
Name: NF3040-Insertion-8
Description: NF3040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3040-Insertion-8 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 34704493 - 34704350
Alignment:
| Q |
28 |
aatctatccatgacaccaaaagattgtatcagctaaacatcgtaatattttcaggatcatcgagattatgcaaaatgaattggatcaaactctaataatc |
127 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
34704493 |
aatctatacatgacaccaaaagattgtatcagctaaaaatcataatattttcaagatcatcgagattatgcaaaatgaatcggatcaaactctaataagc |
34704394 |
T |
|
| Q |
128 |
aaaatataccatcattccttgtgatgaagaatctgctataaccg |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34704393 |
aaaatataccatcattccttgtgatgaagaatctgctataaccg |
34704350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 34704281 - 34704218
Alignment:
| Q |
240 |
ccacgatttttctatggaagagattgagatgaatttttgaagtaaattagagtgaagtgaatat |
303 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34704281 |
ccacgatttgtcaatggaagagattgagatgaattgttgaagtaaattagagtgaagtgaatat |
34704218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 32178884 - 32178937
Alignment:
| Q |
244 |
gatttttctatggaagagattgagatgaatttttgaagtaaattagagtgaagt |
297 |
Q |
| |
|
||||| |||||||||||||||||| |||||| ||||||||| |||||||||||| |
|
|
| T |
32178884 |
gatttgtctatggaagagattgaggtgaattgttgaagtaagttagagtgaagt |
32178937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 28 - 170
Target Start/End: Original strand, 28548708 - 28548850
Alignment:
| Q |
28 |
aatctatccatgacaccaaaagattgtatcagctaaacatcgtaatattttcaggatcatcgagattatgcaaaatgaattggatcaaactctaataatc |
127 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
28548708 |
aatctatacatgacaccaaaagattgtatcagctaaaaatcataatattttcaagatcatcgagattatgcaaaatgaatcggatcaaactctaataagc |
28548807 |
T |
|
| Q |
128 |
aaaatataccatcattccttgtgatgaagaatctgctataacc |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28548808 |
aaaatataccatcattccttgtgatgaagaatctgctataacc |
28548850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 28 - 171
Target Start/End: Complemental strand, 41867702 - 41867559
Alignment:
| Q |
28 |
aatctatccatgacaccaaaagattgtatcagctaaacatcgtaatattttcaggatcatcgagattatgcaaaatgaattggatcaaactctaataatc |
127 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
41867702 |
aatctatacatgacaccaaaagattgtatcagctaaaaatcataatattttcaagatcattgagattatgcaaaatgaatcggatcaaactctaataagc |
41867603 |
T |
|
| Q |
128 |
aaaatataccatcattccttgtgatgaagaatctgctataaccg |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41867602 |
aaaatataccatcattccttgtgatgaagaatctgctataaccg |
41867559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 28548920 - 28548983
Alignment:
| Q |
240 |
ccacgatttttctatggaagagattgagatgaatttttgaagtaaattagagtgaagtgaatat |
303 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28548920 |
ccacgatttgtcaatggaagagattgagatgaattgttgaagtaaattagagtgaagtgaatat |
28548983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 41867498 - 41867435
Alignment:
| Q |
240 |
ccacgatttttctatggaagagattgagatgaatttttgaagtaaattagagtgaagtgaatat |
303 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41867498 |
ccacgatttgtcaatggaagagattgagatgaattgttgaagtaaattagagtgaagtgaatat |
41867435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 297
Target Start/End: Original strand, 40853815 - 40853868
Alignment:
| Q |
244 |
gatttttctatggaagagattgagatgaatttttgaagtaaattagagtgaagt |
297 |
Q |
| |
|
||||| |||||||||||||||||| |||||| ||||||||| |||||||||||| |
|
|
| T |
40853815 |
gatttgtctatggaagagattgaggtgaattgttgaagtaagttagagtgaagt |
40853868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 18638130 - 18638189
Alignment:
| Q |
244 |
gatttttctatggaagagattgagatgaatttttgaagtaaattagagtgaagtgaatat |
303 |
Q |
| |
|
||||| || |||||||||||||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
18638130 |
gatttgtcgatggaagagattgaagtgaattgttgaagtaaattggagtgaagtgaatat |
18638189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 18637999 - 18638030
Alignment:
| Q |
137 |
catcattccttgtgatgaagaatctgctataa |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
18637999 |
catcattccttgtgatgaagaatctgctataa |
18638030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University