View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3040R-Insertion-10 (Length: 362)
Name: NF3040R-Insertion-10
Description: NF3040R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3040R-Insertion-10 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0125 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0012 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 339
Target Start/End: Complemental strand, 57441 - 57111
Alignment:
| Q |
9 |
ggttagacatcaaatctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaa |
108 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
57441 |
ggttagacatcaaacctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtctaatttattcaa |
57342 |
T |
|
| Q |
109 |
gaggagatatttctcaaacggtcagtcctccgtgcgctattttaaatcctcggtttggtcaggtattaaaattcatattgccacggttatgagaaatact |
208 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| |||| ||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||| ||| | |
|
|
| T |
57341 |
gaggcgatttttctcaaacggtcagccctccatgcgttattttaaatcctcggtttggtcgggtattaaaatacatattggcacggttatgagcaattca |
57242 |
T |
|
| Q |
209 |
ttgtggattgtgggaaatggaaacaatattcatttatggactgataattggttaggtgttcctcttgtggatttgatgaatattgatgttgattttcacg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
57241 |
ttgtggattgtgggaaatggaaacaatattcatttctggactgataattggttaggtgttcctcttgtggatttgatgaatattgatgttgattttcacg |
57142 |
T |
|
| Q |
309 |
gacatatgaaaggtatggtgtcggaagttat |
339 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
57141 |
gacatatgaaaggtatggtgtcggaagttat |
57111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 21879586 - 21879252
Alignment:
| Q |
9 |
ggttagacatcaaatctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaa |
108 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
21879586 |
ggttagacatcaaacatacgtgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacgggaaacacagtggtctaatttattcaa |
21879487 |
T |
|
| Q |
109 |
gaggagatatttctcaaacggtcagtcctccgtgcgctattttaaatcctcggtttggtcaggtattaaaattcatattgccacggttatgagaaatact |
208 |
Q |
| |
|
|| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||| || |
|
|
| T |
21879486 |
aagaagatatttctcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcgggtattaaacttcatattggcacggttatgagcaattct |
21879387 |
T |
|
| Q |
209 |
ttgtggattgtgggaaatggaaacaatattcatttatggactgataattggttaggtgttcctcttgtggatttgatgaatattgatgttgattttcacg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
21879386 |
ttgtggattgtgggaaatggaaacaatattcatttttggactgataattggctaggtgttcctcttgtggagttgatgaatattaatgttgattttcacg |
21879287 |
T |
|
| Q |
309 |
gacatatgaaaggtatggtgtcggaagttattgtt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
21879286 |
gacatatgaaaggtatggtgtcggaagttattgtt |
21879252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 1926393 - 1926059
Alignment:
| Q |
9 |
ggttagacatcaaatctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaa |
108 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| |||||||||| |
|
|
| T |
1926393 |
ggttagacatcaaaactacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgcacggcaaacatagtggtctcatttattcaa |
1926294 |
T |
|
| Q |
109 |
gaggagatatttctcaaacggtcagtcctccgtgcgctattttaaatcctcggtttggtcaggtattaaaattcatattgccacggttatgagaaatact |
208 |
Q |
| |
|
|||| ||||||| |||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||| ||| || |
|
|
| T |
1926293 |
gaggcgatatttttcaaacggtcagccctccatgcgctattttaaatcctcggtttggtcgggtattaaacttcatattggcacggttatgagcaattct |
1926194 |
T |
|
| Q |
209 |
ttgtggattgtgggaaatggaaacaatattcatttatggactgataattggttaggtgttcctcttgtggatttgatgaatattgatgttgattttcacg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
1926193 |
ttgtggattgtgggaaatggaaacaatattcatttctggactgataattggctaggtgttcctcttgtcgatttgatgaatattgatgttgattttcatg |
1926094 |
T |
|
| Q |
309 |
gacatatgaaaggtatggtgtcggaagttattgtt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1926093 |
gacatatgaaaggtatggtgtcggaagttattgtt |
1926059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Complemental strand, 18027017 - 18026988
Alignment:
| Q |
149 |
tttaaatcctcggtttggtcaggtattaaa |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18027017 |
tttaaatcctcggtttggtcaggtattaaa |
18026988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 24 - 343
Target Start/End: Original strand, 21811517 - 21811836
Alignment:
| Q |
24 |
ctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaagaggagatatttctc |
123 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | ||||| |||||||||||||| |
|
|
| T |
21811517 |
ctacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgcacgggaaacacagtggtctcatcttttcaaaaggagatatttctc |
21811616 |
T |
|
| Q |
124 |
aaacggtcagtcctccgtgcgctattttaaatcctcggtttggtcaggtattaaaattcatattgccacggttatgagaaatactttgtggattgtggga |
223 |
Q |
| |
|
|||||||||| ||||| ||| |||||||||||| || |||||||| ||||||||| ||||||||| |||||||||||| ||| ||||||||||||||||| |
|
|
| T |
21811617 |
aaacggtcagccctccatgcactattttaaatcatccgtttggtcgggtattaaacttcatattggcacggttatgagcaattctttgtggattgtggga |
21811716 |
T |
|
| Q |
224 |
aatggaaacaatattcatttatggactgataattggttaggtgttcctcttgtggatttgatgaatattgatgttgattttcacggacatatgaaaggta |
323 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
21811717 |
aatggaaacaatattcatttctggactgataattggctaggtgttcctcttgtagagttgatgaatattgatgttgattttcatggacatatgaaaggta |
21811816 |
T |
|
| Q |
324 |
tggtgtcggaagttattgtt |
343 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
21811817 |
tggtgtcggaagttattgtt |
21811836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 29304645 - 29304491
Alignment:
| Q |
24 |
ctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaagaggagatatttctc |
123 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||| | || || || ||||| |||||||| |||| | | |||||||| |
|
|
| T |
29304645 |
ctacgcgtttgattaacgaggctttgattcttaaattttcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagatgcgttatttctc |
29304546 |
T |
|
| Q |
124 |
aaacggtcagtcctccgtgcgctattttaaatcctcggtttggtcaggtattaaa |
178 |
Q |
| |
|
| | |||||| | | ||||| ||||||||||||||||||||| || |||||| |
|
|
| T |
29304545 |
acatggtcagcctagcaagcgctgttttaaatcctcggtttggtcgggaattaaa |
29304491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 178
Target Start/End: Complemental strand, 41345570 - 41345417
Alignment:
| Q |
24 |
ctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaagaggagatatttctc |
123 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| ||||| |||||||||||||||||| | || || || ||||| |||||||| |||| | | |||||||| |
|
|
| T |
41345570 |
ctacgcggttgattaacgaagctttgattcttaaattgtcttgggatttaattgcaaaagatactcaatggtcgaatttatttaagatgcgttatttctc |
41345471 |
T |
|
| Q |
124 |
aaacggtcagtcct-ccgtgcgctattttaaatcctcggtttggtcaggtattaaa |
178 |
Q |
| |
|
| | ||||| ||| | |||||||||||||||||| |||||||| || |||||| |
|
|
| T |
41345470 |
acatggtca--cctagcaagcgctattttaaatcctcagtttggtcgggaattaaa |
41345417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 21307 - 20973
Alignment:
| Q |
9 |
ggttagacatcaaatctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaa |
108 |
Q |
| |
|
|||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| |||| ||||| |
|
|
| T |
21307 |
ggttagacttcatttctacgcgcttgattaatgaggctttaattctgaaattatcttgggatttaattgcacggtaaacatagtggtctcattttttcaa |
21208 |
T |
|
| Q |
109 |
gaggagatatttctcaaacggtcagtcctccgtgcgctattttaaatcctcggtttggtcaggtattaaaattcatattgccacggttatgagaaatact |
208 |
Q |
| |
|
||| ||||||| |||||||||||| ||||| ||| |||||||||||| || |||||||| ||||||||| ||||||||| |||||||||||| ||| || |
|
|
| T |
21207 |
taggtgatatttttcaaacggtcagccctccatgctctattttaaatcttctgtttggtcgggtattaaacttcatattggcacggttatgagcaattct |
21108 |
T |
|
| Q |
209 |
ttgtggattgtgggaaatggaaacaatattcatttatggactgataattggttaggtgttcctcttgtggatttgatgaatattgatgttgattttcacg |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| | |
|
|
| T |
21107 |
ttgtggattgtgggaaatggaaacaatattcatttctggactgataattggctaggtgttcctcttgtagagttgatgaatattgatgttgattttcatg |
21008 |
T |
|
| Q |
309 |
gacatatgaaaggtatggtgtcggaagttattgtt |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
21007 |
gacatatgaaaggtatggtgtcggaagttattgtt |
20973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 9 - 339
Target Start/End: Original strand, 14360 - 14690
Alignment:
| Q |
9 |
ggttagacatcaaatctacgcgcttgattaacgaggctttaattctgaaattatcttgggatttaattgcacaggaaacacagtggtccaatttattcaa |
108 |
Q |
| |
|
||||||| |||| | ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
14360 |
ggttagatatcagacctacgcgattgattaatgaggctttaattctaaaattatcttgggatttaattgcacaggaaacacagtggtctagtttattcaa |
14459 |
T |
|
| Q |
109 |
gaggagatatttctcaaacggtcagtcctccgtgcgctattttaaatcctcggtttggtcaggtattaaaattcatattgccacggttatgagaaatact |
208 |
Q |
| |
|
| | ||||||||||| |||| | ||||| |||||||||||||||||||||||||||| || |||||| | |||||| ||||||| |||| ||| || |
|
|
| T |
14460 |
gcagctttatttctcaaatggtcggccctccatgcgctattttaaatcctcggtttggtcgggcattaaagtatatattggcacggttttgagcaattct |
14559 |
T |
|
| Q |
209 |
ttgtggattgtgggaaatggaaacaatattcatttatggactgataattggttaggtgttcctcttgtggatttgatgaatattgatgttgattttcacg |
308 |
Q |
| |
|
||||||||||| ||| ||||||| |||||| |||| ||||||||||||||||||| || |||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
14560 |
ttgtggattgttggagatggaaataatattaatttctggactgataattggttagatgatcctcttgtggatttgatgagtattgatactgattttcacg |
14659 |
T |
|
| Q |
309 |
gacatatgaaaggtatggtgtcggaagttat |
339 |
Q |
| |
|
| | |||||||||| | ||||||||||||| |
|
|
| T |
14660 |
gtcttatgaaaggtttcatgtcggaagttat |
14690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 178
Target Start/End: Complemental strand, 14675791 - 14675762
Alignment:
| Q |
149 |
tttaaatcctcggtttggtcaggtattaaa |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
14675791 |
tttaaatcctcggtttggtcaggtattaaa |
14675762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 177
Target Start/End: Complemental strand, 25116 - 25088
Alignment:
| Q |
149 |
tttaaatcctcggtttggtcaggtattaa |
177 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25116 |
tttaaatcctcggtttggtcaggtattaa |
25088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 10137342 - 10137378
Alignment:
| Q |
142 |
gcgctattttaaatcctcggtttggtcaggtattaaa |
178 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
10137342 |
gcgctattttaagtcctcggtttggtcgggtattaaa |
10137378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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