View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3040R-Insertion-11 (Length: 365)
Name: NF3040R-Insertion-11
Description: NF3040R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3040R-Insertion-11 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 365
Target Start/End: Original strand, 7278610 - 7278969
Alignment:
| Q |
9 |
aaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaattatattct---ttcacacatttaccctcgctaccatcctcat |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7278610 |
aaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctaccatcctcat |
7278709 |
T |
|
| Q |
106 |
tcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaagc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7278710 |
tcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcaccatcctcattcaccaaagc |
7278809 |
T |
|
| Q |
206 |
ttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7278810 |
ttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttca |
7278909 |
T |
|
| Q |
306 |
acttcctctgtgggacccaccatttgaatttgatcaacaaattcttgcagaactatagcc |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
7278910 |
acttcctctgtgggacccaccatttgaatttgatcaacaaattcttgaagaacaatagcc |
7278969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 365
Target Start/End: Complemental strand, 7375229 - 7374870
Alignment:
| Q |
9 |
aaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaattatattctt---tcacacatttaccctcgctaccatcctcat |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7375229 |
aaagcttccactttgtcaccttcctcatcttcaccacccccctccttcatcaaaaaatgatcttcttctttcacacatttaccctcgctaccatcctcat |
7375130 |
T |
|
| Q |
106 |
tcatcaaaggtcccattttttcacctccctcattcttctcttcacaccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaagc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7375129 |
tcatcaaaggtcccattttttcacctccctcattcttctcttcataccccctctcttctttctccatacaattcacctcgccatcctcattcaccaaagc |
7375030 |
T |
|
| Q |
206 |
ttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttca |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7375029 |
ttcaattttattaccaccctcattctcctcttcacaccccacctcttccttctccaaacaattctcttcaacctcaacacacttaccttcaccgccttca |
7374930 |
T |
|
| Q |
306 |
acttcctctgtgggacccaccatttgaatttgatcaacaaattcttgcagaactatagcc |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
7374929 |
acttcctctgtgggacccaccatttgaatttgatcaacaaattcttgaagaacaatagcc |
7374870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 7278543 - 7278593
Alignment:
| Q |
122 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccat |
172 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||||||| ||||||| |||||| |
|
|
| T |
7278543 |
tttttcacctccctcattctcctccttacaccccctatcttcttcctccat |
7278593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 7375296 - 7375246
Alignment:
| Q |
122 |
tttttcacctccctcattcttctcttcacaccccctctcttctttctccat |
172 |
Q |
| |
|
|||||||||||||||||||| ||| | ||||||||| ||||||| |||||| |
|
|
| T |
7375296 |
tttttcacctccctcattctcctccttacaccccctatcttcttcctccat |
7375246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 7278520 - 7278576
Alignment:
| Q |
189 |
tcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacacccc |
245 |
Q |
| |
|
||||||||| |||||||||||| ||| | ||| |||||||||||||| | ||||||| |
|
|
| T |
7278520 |
tcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
7278576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 7375319 - 7375263
Alignment:
| Q |
189 |
tcctcattcaccaaagcttcaattttattaccaccctcattctcctcttcacacccc |
245 |
Q |
| |
|
||||||||| |||||||||||| ||| | ||| |||||||||||||| | ||||||| |
|
|
| T |
7375319 |
tcctcattccccaaagcttcaaatttttcacctccctcattctcctccttacacccc |
7375263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University