View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3040R-Insertion-12 (Length: 491)
Name: NF3040R-Insertion-12
Description: NF3040R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3040R-Insertion-12 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 242 - 491
Target Start/End: Original strand, 8165186 - 8165435
Alignment:
| Q |
242 |
ctattgaatttggtagttgaaaactactttgaatatttgatgcttacttcaatcatatctggtgcataatgttccaatttggcaattcaatgaggtactt |
341 |
Q |
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| T |
8165186 |
ctattgaatttggtagttgaaaactactttgaatatttgatgcttacttcaatcatatttggtgcataatgttccaatttggcaattcaatgaggtactt |
8165285 |
T |
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| Q |
342 |
tcactttcatcttttgtttctttcatggtttttgttattcatttcaaatactcatgagttagaacaagatcaaagtcgaaccttgttacgattaagagct |
441 |
Q |
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| T |
8165286 |
tcactttcatcttttgtttctttcatggtttttgttattcatttcaaatactcatgagttagaacaagatcaaagtcaaaccttgttacaattaagagct |
8165385 |
T |
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| Q |
442 |
tatttagaattcccttcttcattacaaattatggaaaactacaataatga |
491 |
Q |
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| T |
8165386 |
tatttagaattcccttcttcattacaaattatggaaaactacaataatga |
8165435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 8164952 - 8165155
Alignment:
| Q |
8 |
aattctcttcttggtagtttccttgtgaaatttctagtgtatgttgccctaacccttggaaatctttgagctttgaaggatatatattttttggtgtata |
107 |
Q |
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| T |
8164952 |
aattctcttcttggtagtttccttgtgaaatttctagtgtatgttgccctaacccttggaaatctttgagctttgaaggatatatattttttggtgtata |
8165051 |
T |
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| Q |
108 |
tgagctatcctcagcatacacaactgcagagattaatctctcgagtctgataggagaactctgagcggtaggatctatatgtattagtcttttgacttct |
207 |
Q |
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| T |
8165052 |
tgagctatcctcaacatacacaactgtagagattaatctctcgagtctgataggataactttgagcggtaggatctatatgcattagtcttttgacttct |
8165151 |
T |
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| Q |
208 |
aaac |
211 |
Q |
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| T |
8165152 |
aaac |
8165155 |
T |
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