View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3040R-Insertion-14 (Length: 577)
Name: NF3040R-Insertion-14
Description: NF3040R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3040R-Insertion-14 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 524; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 9 - 577
Target Start/End: Complemental strand, 37930204 - 37929634
Alignment:
| Q |
9 |
tttgcaactcactttcccatgctttctttgttctgccaagaagcaataatcccaaaactttgagagctaatggaactcctttagcataatttaatacctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37930204 |
tttgcaactcactttcccatgctttctttgttctgccaagaagcaataatcccaaaactttgagagctaatggaactcctttagcataatttaatacctt |
37930105 |
T |
|
| Q |
109 |
ttctgataagctcacataagtttctattggatagttttgtttaaaagcacttaaacagaagagttgtagagaatcttgaaaatccatctccctaacttca |
208 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37930104 |
ttctgataagctcacataagtttatattggatagttttgtttaaaagcacttaaacagaagagttgtagagaatcttgaaaatccatctccctaacttca |
37930005 |
T |
|
| Q |
209 |
tatatttcatcagcattggcattctcaagcacttgcttgtctctactagtcacaatgattctactcccaaggccaaa--ggtactacgaccaattaaacc |
306 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37930004 |
tatatttcatcggcattggcattctcaagcacttgcttgtctctactactcacaatgattctactcccaaggccaaaaaggtactacgaccaattaaacc |
37929905 |
T |
|
| Q |
307 |
ttcaagttgatctgaatcgttcacgtcatcaagaacaaggagaacctctcctcgttgaagccttggaatgtatgaaaacttgaatccagaggatgtaatg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37929904 |
ttcaagttgatctgaatcgttcacgtcatcaagaacaaggagaacctttcctcgttgaagccttggaatgtatgaaaacttgaatccagaggatgtaatg |
37929805 |
T |
|
| Q |
407 |
tcttcctctagaagttgtgataagtattttctttgtacatggcatagtcaagttctttctatttcttgttgagcatttagaatgatgcttttggaactga |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37929804 |
tcttcctctagaagttgtgataagtattttctttgtacatggcgtagtccagctctttctatttcttgttgagcatttagaatgatgcttttggaactga |
37929705 |
T |
|
| Q |
507 |
gctgagttgagaatttatgatagattgcattggcaattgttgttttgcctatccctcccatgccccgtatt |
577 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37929704 |
actgagttgagaattgatgatagattgcattggcaattgttgttttgcctatccctcccatgccccgtatt |
37929634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 577
Target Start/End: Original strand, 37957379 - 37957953
Alignment:
| Q |
9 |
tttgcaactcactttcccatgctttctttgttctgccaagaagcaataatcccaaaactttgagagctaatggaactcctttagcataatttaatacctt |
108 |
Q |
| |
|
||||||| | |||||||||||||| || | ||||||| |||| ||| ||||||||||| || |||| ||||| || |||||||||| ||||||||| |
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| T |
37957379 |
tttgcaaatgactttcccatgcttcctcttttctgccctgaagaaatttgcccaaaactttaagcgctaccggaaccccgttagcataatctaatacctt |
37957478 |
T |
|
| Q |
109 |
ttctgataagctcacataagtttctattggatagttttgtttaaaagcacttaaacagaagagttgtagagaatcttgaaaatccatctccctaacttca |
208 |
Q |
| |
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|| |||||| |||||||||| ||||||||||| |||||||||||||||| | |||||||||||| ||||||||||||| || ||||||| | |||| | |
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| T |
37957479 |
ttttgataaactcacataaggttctattggatggttttgtttaaaagcaaatgaacagaagagttttagagaatcttgagaacccatctcatttacttta |
37957578 |
T |
|
| Q |
209 |
tatatttcatcagcattggcattctcaagcacttgcttgtctctactagtcacaatgattctactcccaaggccaaaggtactacga------ccaatta |
302 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||| ||||| || ||||||| |
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| T |
37957579 |
tatatttcatcagcattgccattcttgagcacttgcttgtctctgttagtcacaatggttctactcccttggccaaagttactatgatgtgttccaatta |
37957678 |
T |
|
| Q |
303 |
aaccttcaagttgatctgaatcgttcacgtcatcaagaacaaggagaacctctcctcgttgaagccttggaatgtatgaaaacttgaatccagaggatgt |
402 |
Q |
| |
|
|| ||||||||||||| ||||| ||||| ||||||||||||||||||| || | |||| ||||||||| ||||||| ||| || ||||||||| |
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|
| T |
37957679 |
aatcttcaagttgatcagaatctttcacatcatcaagaacaaggagaatctttgtccgtttgagccttggatcaaatgaaaaattggatttagaggatgt |
37957778 |
T |
|
| Q |
403 |
aatgtcttcctctagaagttgtgataagtattttctttgtacatggcatagtcaagttctttctatttcttgttgagcatttagaatgatgcttttggaa |
502 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| |||||||| ||||| || |||||| |||||||||| ||||||||| ||||||| ||||| |
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|
| T |
37957779 |
aatgtcttcatctagaagttctgataagtattttcttcgtacatggtctagtccagctctttcgatttcttgtttcacatttagaacgatgcttctggaa |
37957878 |
T |
|
| Q |
503 |
ctgagctgagttgagaatttatgatagattgcattggcaattgttgttttgcctatccctcccatgccccgtatt |
577 |
Q |
| |
|
|||| |||||||| || |||||||||||||||| |||||||||||||||||||| ||||||||||||||| |||| |
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|
| T |
37957879 |
ctgaactgagttgcgagtttatgatagattgcactggcaattgttgttttgcctgtccctcccatgccccatatt |
37957953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 9 - 349
Target Start/End: Original strand, 44644195 - 44644538
Alignment:
| Q |
9 |
tttgcaactcactttcccatgctttctttgttctgccaagaagcaataatcccaaaactttgagagctaatggaactcctttagcataatttaatacctt |
108 |
Q |
| |
|
|||| |||| |||||||||||||| ||||| ||| || ||| || || |||||||||||||| ||||||||||| | ||| ||||||||||||| || |
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|
| T |
44644195 |
tttgtaactgactttcccatgcttcctttggtctaccgcaaagtaaaaaacccaaaactttgagtgctaatggaacccttttggcataatttaatatatt |
44644294 |
T |
|
| Q |
109 |
ttctgataagctcacataagtttctattggatagttttgtttaaaagcacttaaacagaagagttgtagagaatcttgaaaatccatctccctaacttca |
208 |
Q |
| |
|
|||||||| | ||| ||| ||||| ||||| |||||||||| ||| |||||||||||||| ||||||| || ||||||| ||||||| | |||||| |
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| T |
44644295 |
ctctgataaccccacgtaaccttctaagggataactttgtttaaaggcatttaaacagaagagtcgtagagattcatgaaaattcatctccttgacttca |
44644394 |
T |
|
| Q |
209 |
tatatttcatcagcattggcattctcaagcacttgcttgtctctactagtcacaatgattctactcccaaggccaaaggtactacg---accaattaaac |
305 |
Q |
| |
|
|||||| ||||||| ||| |||||| || || ||| ||||||| |||||||||||||||||||| || | |||| ||||| | ||||||||| |
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|
| T |
44644395 |
tatattccatcagctttgacattcttcagtacctgcatgtctctgctagtcacaatgattctactacctggtgcaaacttactaagctttccaattaaat |
44644494 |
T |
|
| Q |
306 |
cttcaagttgatctgaatcgttcacgtcatcaagaacaaggaga |
349 |
Q |
| |
|
|| ||||||||| |||| ||| || |||||||||||||||||| |
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|
| T |
44644495 |
ctctaagttgatccgaattgttaacatcatcaagaacaaggaga |
44644538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 572
Target Start/End: Original strand, 44644649 - 44644761
Alignment:
| Q |
460 |
tctttctatttcttgttgagcatttagaatgatgcttttggaactgagctgagttgagaatttatgatagattgcattggcaattgttgttttgcctatc |
559 |
Q |
| |
|
||| ||||||||||||||| ||||||| |||||||| || |||||| || |||| ||||| |||| |||||| | |||||||||||||| ||||| |
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|
| T |
44644649 |
tctctctatttcttgttgaacatttaggatgatgctgttaaaactgaattgggttgccaatttgcgatatattgcactagcaattgttgttttccctatt |
44644748 |
T |
|
| Q |
560 |
cctcccatgcccc |
572 |
Q |
| |
|
|||||||| |||| |
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| T |
44644749 |
cctcccatacccc |
44644761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 9 - 286
Target Start/End: Complemental strand, 25721787 - 25721507
Alignment:
| Q |
9 |
tttgcaactcactttcccatgctttctttgttctgccaagaagcaataatcccaaaactttgagagctaatggaactcctttagcataatttaatac--- |
105 |
Q |
| |
|
||||||| |||||||||||||| | | ||||||| ||| |||||||||| |||||| |||||| ||| |||||| | |||||||| |||||||| |
|
|
| T |
25721787 |
tttgcaattcactttcccatgcatcccttgttctaccatgaagcaataaccccaaattcttgagaactagtggaacccttttagcatggtttaatacaag |
25721688 |
T |
|
| Q |
106 |
cttttctgataagctcacataagtttctattggatagttttgtttaaaagcacttaaacagaagagttgtagagaatcttgaaaatccatctccctaact |
205 |
Q |
| |
|
||||||||||||| ||||||| || ||| ||||||||||||||||| ||| |||||| ||||||||||| |||||||||||| ||||||| | ||| |
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|
| T |
25721687 |
cttttctgataagtctacataagcttttataggatagttttgtttaaaggcatttaaactgaagagttgtactgaatcttgaaaacacatctccttgact |
25721588 |
T |
|
| Q |
206 |
tcatatatttcatcagcattggcattctcaagcacttgcttgtctctactagtcacaatgattctactcccaaggccaaag |
286 |
Q |
| |
|
|| ||||||||||| | | ||||||||| |||||| || |||||||||||||||| |||||||||||| || |||||||| |
|
|
| T |
25721587 |
tcgtatatttcatctgaaatggcattcttaagcacatgtttgtctctactagtcataatgattctactaccctggccaaag |
25721507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 19869328 - 19869225
Alignment:
| Q |
170 |
agttgtagagaatcttgaaaatccatctccctaacttcatatatttcatcagcattggcattctcaagcacttgcttgtctctactagtcacaatgattc |
269 |
Q |
| |
|
|||||||||||||||||||||| |||||| | |||||||||||||||||||||| ||||| ||| |||||| |||||||||||||||||||||||| |
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|
| T |
19869328 |
agttgtagagaatcttgaaaattcatctcattcacttcatatatttcatcagcatctatattcttaagtacttgcatgtctctactagtcacaatgattc |
19869229 |
T |
|
| Q |
270 |
tact |
273 |
Q |
| |
|
|||| |
|
|
| T |
19869228 |
tact |
19869225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 19869406 - 19869352
Alignment:
| Q |
63 |
aaactttgagagctaatggaactcctttagcataatttaataccttttctgataa |
117 |
Q |
| |
|
||||||||||||||||||| | ||||||||| ||||||| ||||| |||||||| |
|
|
| T |
19869406 |
aaactttgagagctaatgggatccctttagcacaatttaaaaccttctctgataa |
19869352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 539 - 577
Target Start/End: Original strand, 34727847 - 34727885
Alignment:
| Q |
539 |
gcaattgttgttttgcctatccctcccatgccccgtatt |
577 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
34727847 |
gcaattgttgttttgccgatccctcccatgccccatatt |
34727885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 539 - 577
Target Start/End: Original strand, 34731005 - 34731043
Alignment:
| Q |
539 |
gcaattgttgttttgcctatccctcccatgccccgtatt |
577 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
34731005 |
gcaattgttgttttgccgatccctcccatgccccatatt |
34731043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 539 - 572
Target Start/End: Original strand, 34735604 - 34735637
Alignment:
| Q |
539 |
gcaattgttgttttgcctatccctcccatgcccc |
572 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
|
|
| T |
34735604 |
gcaattgttgttttgccgatccctcccatgcccc |
34735637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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