View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3040R-Insertion-15 (Length: 740)
Name: NF3040R-Insertion-15
Description: NF3040R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3040R-Insertion-15 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0009 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 14 - 740
Target Start/End: Original strand, 28283632 - 28284350
Alignment:
| Q |
14 |
aagaaataggtggatgaattgcaagactactctaagaagtattgagtgtattgagtgtcaccgtacccatatgcatagagaaggaaatgttgttgtagac |
113 |
Q |
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| T |
28283632 |
aagaaataggtggatgaattgcaagactactctaagaagtattgagtgg-----gtg-----gtacccatatacatagagaaggaaatgttgttgtagat |
28283721 |
T |
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| Q |
114 |
gctttagctaataatggccaaagcttaatgatattagctaataatgttgttggagaaacacgagaagaaaatgttgttggagatgattctacagattcac |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28283722 |
gctttagctaataatggccaaagcttaatgatattagctaataatgttgttggagaaacacaagaagaaaatgttgttggagatgattctacagattcac |
28283821 |
T |
|
| Q |
214 |
cactcactaaaatgcggggtgcacgacaaaactcttcaagccacattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaag |
313 |
Q |
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| T |
28283822 |
cactcactaaaatgcggggtgcacgacaaaactcttcaagccacattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaag |
28283921 |
T |
|
| Q |
314 |
cgtaatgaaaggtttaacctctgctgcacttagttgttttccgacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28283922 |
cgtaatgaaaggtttaacctctgctgcacttagttgttttccgacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaag |
28284021 |
T |
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| Q |
414 |
tatgaagttctgtgaatagcataatgtattaatgttaaaaatatatttaacctaaaatgatatatat--acactaacatattctaatggatgaatatata |
511 |
Q |
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| T |
28284022 |
tatgaagttctgtgaataacataatgtattaatgttaaaaatatatttaacctaaaatgatatatatacacactaacatattctaatggatgaatatata |
28284121 |
T |
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| Q |
512 |
tcattaaaatgcagaactgcaaagttgaattaaggaatttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactca |
611 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| |
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| T |
28284122 |
tcataaaaatgcagaactgcaaagttgaattaaggaatttacttgtcaaattcagggtgcatggtgttatcccaccctttaggatcaacaacattactca |
28284221 |
T |
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| Q |
612 |
tagttgagtacgcaaagataattttaggataagtcatccatgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagta |
711 |
Q |
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| T |
28284222 |
tagttgagtaagcaaagataattttaggataagtcatccatgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagta |
28284321 |
T |
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| Q |
712 |
taaatcagcatctgatacactttttcttg |
740 |
Q |
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| T |
28284322 |
taaatcagcatctgatacactttttcttg |
28284350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 208 - 446
Target Start/End: Original strand, 31113912 - 31114154
Alignment:
| Q |
208 |
attcaccactcactaaaatgcggggtgcacgacaaaactcttcaagccacat----taattagacttttggaggaggaaggagccatttagatccttgaa |
303 |
Q |
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|||||||||||||||||||| |||||||| | |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31113912 |
attcaccactcactaaaatgtggggtgcaaggcaaaactcttgaagccacatacattaattagacttttggaggaggaaggagccattttgatccttgaa |
31114011 |
T |
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| Q |
304 |
tcattccaagcgtaatgaaaggtttaacctctgctgcacttagttgttttccgacagttgcacgtcctttgggatctgactttggtcctgtgttctgata |
403 |
Q |
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| T |
31114012 |
tcattccaagtgtaatgaaaggtttaacctctgcttcacttagttgctttgtgatacttacacgccctttcggatctgattttggtcctgtgttttgata |
31114111 |
T |
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| Q |
404 |
ttctccaaagtatgaagttctgtgaatagcataatgtattaat |
446 |
Q |
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| T |
31114112 |
ttctccaaagtatgatgttctgcagataagataatgtattaat |
31114154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 550 - 740
Target Start/End: Original strand, 31114225 - 31114415
Alignment:
| Q |
550 |
ttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactcatagttgagtacgcaaagataattttaggataagtcatc |
649 |
Q |
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||||||||||||||||||||||| | |||||||||||||| |||| ||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
31114225 |
ttacttgtcaaattcagggtgcatgccattatcccatccttttggatgaacaacattggtcatagttgagtaagcatagataattttaggataagtcatc |
31114324 |
T |
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| Q |
650 |
catgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagtataaatcagcatctgatacactttttcttg |
740 |
Q |
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| T |
31114325 |
catgctctagctaagaaagtagtagttccagttccagtaatatcacaatgcacaaatgagtataaatcagcatctgatgcactttttcttg |
31114415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 133; Significance: 9e-69; HSPs: 4)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 256 - 428
Target Start/End: Complemental strand, 174488 - 174316
Alignment:
| Q |
256 |
acattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaagcgtaatgaaaggtttaacctctgctgcacttagttgttttcc |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||| ||| | |
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| T |
174488 |
acattaattagacttttggaggaggaaggagccatttagatgcttgaatcattccaagtgtaatgaaaggtttaacctctgcttcagttagttgctttgc |
174389 |
T |
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| Q |
356 |
gacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
428 |
Q |
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||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
174388 |
aacacttgcacgccctttaggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
174316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 256 - 428
Target Start/End: Complemental strand, 180001 - 179829
Alignment:
| Q |
256 |
acattaattagacttttggaggaggaaggagccatttagatccttgaatcattccaagcgtaatgaaaggtttaacctctgctgcacttagttgttttcc |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| || ||||||| ||| | |
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| T |
180001 |
acattaattagacttttggaggaggaaggagccatttagatgcttgaatcattccaagtgtaatgaaaggtttaacctctgcttcagttagttgctttgc |
179902 |
T |
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| Q |
356 |
gacagttgcacgtcctttgggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
428 |
Q |
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| T |
179901 |
aacacttgcacgccctttaggatctgactttggtcctgtgttctgatattctccaaagtatgaagttctgtga |
179829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 550 - 740
Target Start/End: Complemental strand, 173597 - 173407
Alignment:
| Q |
550 |
ttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactcatagttgagtacgcaaagataattttaggataagtcatc |
649 |
Q |
| |
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||||||||||||||||||||||| || ||||||||| |||||||||| ||||||||| ||||||||||||| ||| |||||||||| |||||||||||| |
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| T |
173597 |
ttacttgtcaaattcagggtgcatggcgttatcccaccctttgggattaacaacattggtcatagttgagtaagcatagataattttgggataagtcatc |
173498 |
T |
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| Q |
650 |
catgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagtataaatcagcatctgatacactttttcttg |
740 |
Q |
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||||| || ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
173497 |
catgccctagctaagaaagtggaagatccagttccagtaatatcacaatgcacaaatgagtataaatcagcatctgatgcagtttttcttg |
173407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 550 - 740
Target Start/End: Complemental strand, 179110 - 178920
Alignment:
| Q |
550 |
ttacttgtcaaattcagggtgcaaggtgttatcccatcctttgggatcaacaacattactcatagttgagtacgcaaagataattttaggataagtcatc |
649 |
Q |
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||||||||||||||||||||||| || ||||||||| |||||||||| ||||||||| ||||||||||||| ||| |||||||||| |||||||||||| |
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| T |
179110 |
ttacttgtcaaattcagggtgcatggcgttatcccaccctttgggattaacaacattggtcatagttgagtaagcatagataattttgggataagtcatc |
179011 |
T |
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| Q |
650 |
catgctctggctaagaaagtggtagatccagttccagtaacatcacaatgcacaaatgagtataaatcagcatctgatacactttttcttg |
740 |
Q |
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||||| || ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
179010 |
catgccctagctaagaaagtggaagatccagttccagtaatatcacaatgcacaaatgagtataaatcagcatctgatgcagtttttcttg |
178920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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